Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p18
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   45   6e-05
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      32   0.48 
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)             29   2.6  
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   4.5  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/53 (43%), Positives = 29/53 (54%)
 Frame = +1

Query: 166 VCLLSLTILCCTNLSFARQVPKECAKGPQVWCESLKRGAECGAVGHCTATVWE 324
           VCLL+ T    T+  F    P+ C  GP  WC SL+   EC AV HC  +VW+
Sbjct: 345 VCLLAAT----THAKFVGN-PR-CVYGPAYWCRSLEHAQECDAVEHCKNSVWK 391


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 625 CFSCSTK*Y-CPISCCYTCRRFCTLSRPMCSI*ERDVCNFRNGPCCLC 485
           C+SC    Y C ++CC +CR  C   R  C    R VC      CC C
Sbjct: 220 CYSCRVVCYSCRVACC-SCRVVCYSCRVACCS-CRVVCYSCRVACCSC 265



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 625 CFSCSTK*Y-CPISCCYTCRRFCTLSRPMCSI*ERDVCNFRNGPCCLC 485
           C SC    Y C ++CC +CR  C   R +C    R VC      CC C
Sbjct: 150 CCSCRVVCYSCRVACC-SCRVACCSCRVVCYS-CRVVCYSCRVACCSC 195



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 625 CFSCSTK*YCPISCCYTCRRFCTLSRPMCSI*ERDVCNFRNGPCCLC 485
           C SC    Y     CY+CR  C   R +C       C+ R   CC C
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVA-CCSC 216


>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = -1

Query: 461 WISWHADSM-LAARYSSLIRSLTSLSPRN-SFTNF-DDISLSETSGFCFSHTVAVQCPTA 291
           W+  H DS  +AA     +R    +   N    N+ DD ++SET     S  +       
Sbjct: 34  WLKPHIDSNNVAASGLKYLRDRELIDHDNMELWNYVDDTTISETIARESSSNIQAAVDAL 93

Query: 290 PHSAPRFRLSHHTCGPLAHSFGTCRANDKFVQ 195
             SA +F+L+   C  L   F T  +N + +Q
Sbjct: 94  SASADKFKLNERKCKELRIGFSTKPSNFEPIQ 125


>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 517 IHHVLKSNTSAETMCKIVGMCNNMKLDNIISLNKKSTNV 633
           IHHV+ ++ SA+    I     + K+D+I+S +K   ++
Sbjct: 211 IHHVIANDISADAFSLIENNVKHNKVDHIVSASKNDASL 249


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 RSFVVQICRLRDKYRRNVLRDHKYG 259
           R  +V +C  RD   RNV RDH  G
Sbjct: 17  RKIMVMVCHGRDNGHRNVTRDHGNG 41


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 328  VSPTQSPYSVQPRRIQPPALDSRTILVV---P*HIPSVLVAQTTNLYNKGSLETVDKQQT 158
            V  T S  S +PR I P A  SRTI  V   P  IP V    TT    + S  T    +T
Sbjct: 873  VETTPSTVSTKPRTIFPVAASSRTISPVETTPETIPPVETKSTTISAIESSPRTASTVET 932


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,571,791
Number of Sequences: 59808
Number of extensions: 475169
Number of successful extensions: 1439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)