Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p18
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.9  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +1

Query: 340 VSDNEI---SSKFVKLFRGLKDVKDLINE 417
           +SD +I   SSK +K F   K +K+++NE
Sbjct: 107 ISDADIHLKSSKLIKCFAKYKTLKEIMNE 135


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 283 ECGAVGHCTATVWEK 327
           E G +GHCTA+V ++
Sbjct: 310 ERGELGHCTASVMDE 324


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 NEISSKFVKLFRGLKDVKDL 408
           N+I   +V  F+G+ DVKD+
Sbjct: 278 NDILRPYVPEFKGVLDVKDV 297


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 NEISSKFVKLFRGLKDVKDL 408
           N+I   +V  F+G+ DVKD+
Sbjct: 193 NDILRPYVPEFKGVLDVKDV 212


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 NEISSKFVKLFRGLKDVKDL 408
           N+I   +V  F+G+ DVKD+
Sbjct: 512 NDILRPYVPEFKGVLDVKDV 531


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 657 ELIFMLDRHVGAFLVQ 610
           ++ F L RH G FL+Q
Sbjct: 235 QVSFNLQRHTGYFLIQ 250


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 648 FMLDRHVGAFLVQ 610
           F L RH+G FL+Q
Sbjct: 207 FHLQRHMGNFLIQ 219


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 310 PYSVQPRRIQPPALDSRTILVVP*HI 233
           PY+ +   + PP    RT+ VV  H+
Sbjct: 894 PYNQRGTVVSPPPTKRRTMKVVKYHL 919


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 310  PYSVQPRRIQPPALDSRTILVVP*HI 233
            PY+ +   + PP    RT+ VV  H+
Sbjct: 932  PYNQRGTVVSPPPTKRRTMKVVKYHL 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,478
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)