Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p16
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 87 4e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 28 0.36
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.62
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 1.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 24 4.4
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 24 4.4
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 23 7.7
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 23 7.7
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 23 7.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 7.7
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 87.4 bits (207), Expect = 4e-19
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 27.9 bits (59), Expect = 0.36
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 196 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 104
++S+ L +P TP S +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.62
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 166 SPVTPLSVISNSVSCAHPYPLRNGS 92
+P TP++V S++V+ AH Y GS
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHGGS 1006
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 154 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 14
P +I +S S HP PL +G VL + + NNK + + SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.2 bits (50), Expect = 4.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 228 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 130
YRVFI LHL A +FVL + L +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +2
Query: 80 LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 175
+K+ +P+P+W ++ G + W R K
Sbjct: 23 VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 181 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 50
+++ + TP +I+ + H L S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 81 SFLANLRLIINVLWADILNNQVVKTKC 1
+F LR I++ W+D++ Q+ T C
Sbjct: 250 NFSTELRKIVSKKWSDVVPFQLPATYC 276
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 KTFIIKRKLAKKLKQNRPIPQW 109
+T +K+KL K NRP+P W
Sbjct: 18 RTITVKQKLGK----NRPLPGW 35
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 36 RPIRRLLLSANWPKS*NKTD 95
RP++ +L N PKS K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,183
Number of Sequences: 5004
Number of extensions: 15963
Number of successful extensions: 55
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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