Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p16
         (307 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   0.57 
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.75 
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.3  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.3  
SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.3  
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   7.0  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 2   HFVLTT*---LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH--WR 166
           H+ +TT    LF     K   +  K  + L + R IP     R G  +RY  KRRH  ++
Sbjct: 586 HYDITTQKYILFGKKVRKPVRLLTKYCRLLFRGRKIPLRKGKRGGLVVRYRKKRRHLSFK 645

Query: 167 RTKLKL 184
           + K+K+
Sbjct: 646 QGKVKM 651


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -1

Query: 211 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRH 32
           +T+NT +S  +    SPVT    I++  S        N   + ++FG  +  ++R+ G+ 
Sbjct: 144 VTYNTSSSSNVSTTRSPVTVARTITSQSS--------NRQRVCEIFGNTSGRSRRVRGKR 195

Query: 31  FEQSSCQN 8
            +Q+S  N
Sbjct: 196 VQQNSTNN 203


>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 172 CPSPVTPLSVISNSVSCAH 116
           CPSP TP S  SNS S A+
Sbjct: 40  CPSPTTPPSSRSNSSSSAY 58


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  KMSAHKTFIIKRKLAKKLKQNRPIP 103
           KM+A + F  +RK A K   N P+P
Sbjct: 898 KMAADRLFKFRRKFASKPNANPPLP 922


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 208 TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPL 104
           T + F      L P PV PL + S+  S  H +P+
Sbjct: 126 TLDEFPRCTGPLVPRPVRPLMLASDQFSSLHMFPM 160


>SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 65  KLAKKLKQNRPIPQWVRMRTGNTIRYNAK 151
           KLA K   N   P+++R+   N  RYN +
Sbjct: 139 KLAHKPLYNNSFPEYLRLSVRNDTRYNLR 167


>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 101 PQWVRM-RTGNTIRYNAKRRHW 163
           P+W+   R GN I Y+  RR W
Sbjct: 646 PEWLDFPRAGNNISYHYARRQW 667


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 62   RKLAKKLKQNR-PIPQWVRMRTGNTIRYNAKRRHWRRTKLK 181
            +K+ K + Q R    QWV   T   +RY+  +RHW   K K
Sbjct: 2741 KKIYKIVTQGRHDANQWV---TSFKVRYSQNKRHWTWFKTK 2778


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 208  TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQF 65
            T +T   L +  CP   T +   +N   C    P RNG   +   G F
Sbjct: 1142 TCSTNGKLAVCNCPGDFTGVHCETNKDECNEAMPCRNGGSCYNSIGFF 1189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,015,853
Number of Sequences: 59808
Number of extensions: 121531
Number of successful extensions: 347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)