Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p16
         (307 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p pro...   101   2e-22
AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA...   101   2e-22
AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal pr...    99   1e-21
AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulf...    26   7.9  
AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA...    26   7.9  

>AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p
           protein.
          Length = 51

 Score =  101 bits (241), Expect = 2e-22
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
           M+AHK+F IK+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRHWRRTKLKL
Sbjct: 1   MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLKL 51


>AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA
           protein.
          Length = 51

 Score =  101 bits (241), Expect = 2e-22
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
           M+AHK+F IK+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRHWRRTKLKL
Sbjct: 1   MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLKL 51


>AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal
           protein 46 protein.
          Length = 51

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 43/51 (84%), Positives = 48/51 (94%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
           M+AHK+F IK+KLAKKLKQNR +PQWVR+ TGNTIRYNAKRRHWRRTKLKL
Sbjct: 1   MAAHKSFRIKQKLAKKLKQNRSVPQWVRLATGNTIRYNAKRRHWRRTKLKL 51


>AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulfate
            N-deacetylase/N-sulfotransferase homolog protein.
          Length = 1048

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 41   HKTFIIKRKLAKKLKQNRPIPQWVR 115
            H T ++K  L KKL  +RPIPQW++
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLK 1041


>AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA
            protein.
          Length = 1048

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 41   HKTFIIKRKLAKKLKQNRPIPQWVR 115
            H T ++K  L KKL  +RPIPQW++
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLK 1041


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,021,439
Number of Sequences: 53049
Number of extensions: 172158
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)