Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p15
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                  314   4e-86
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         85   5e-17
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             38   0.006
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score =  314 bits (771), Expect = 4e-86
 Identities = 138/191 (72%), Positives = 169/191 (88%)
 Frame = +2

Query: 92  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 271
           MSI+ YNG A++AM G++CVAIA D+R GIQAQTVS +F K+FQMG  L+VGLPGLATD 
Sbjct: 71  MSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDV 130

Query: 272 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 451
           QT+  RLKFR+NLYEL+E R ++PKTF +M+SNLLYERRFGPYF+EPVIAGLDP  N+P+
Sbjct: 131 QTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPF 190

Query: 452 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAI 631
           + +MDLIGCP E +DFVVSGTCSEQ+YGMCE+LW P+L+PD+LFETISQAL+NA DRDA+
Sbjct: 191 ISSMDLIGCPMETKDFVVSGTCSEQMYGMCESLWVPDLEPDDLFETISQALLNAVDRDAV 250

Query: 632 SGWGAVVYIIE 664
           SGWGAVV++IE
Sbjct: 251 SGWGAVVHVIE 261


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 9/201 (4%)
 Frame = +2

Query: 86  TNMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 265
           T  S  A+NGG V+A+ G+D   IA+D R     Q  + + PKV+++  +  +G  G   
Sbjct: 78  TYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHG 137

Query: 266 DTQTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQ 445
           D  T+ + +  R+ +YE    + M     + MLS +LY RRF PY+   ++AGLD  + +
Sbjct: 138 DCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDS-EGK 196

Query: 446 PYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMC---------EALWEPNLKPDELFETISQ 598
             V + D +G   E E +   G+ S  L  +          E +    L  D+    +  
Sbjct: 197 GCVFSFDPVG-SYEREVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKD 255

Query: 599 ALVNAADRDAISGWGAVVYII 661
              +AA+RD  +G   ++ ++
Sbjct: 256 VFTSAAERDIYTGDAVIINVV 276


>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 413 VIAGLDPYDNQPYVCNMDLIG-CPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFET 589
           + AG D   N   V ++ L G C  +P  F + G+ S  +YG C+A ++  +  +E F  
Sbjct: 30  ICAGWDKL-NGGQVYSIPLGGMCIRQP--FTIGGSGSTYIYGHCDATYKSGMSKEECFNF 86

Query: 590 ISQALVNAADRDAISG 637
           +  A+  A  RD  SG
Sbjct: 87  VKTAVALAMSRDGSSG 102


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 26/202 (12%)
 Frame = +2

Query: 110 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 289
           +G   +A K +  V +A D R    +   S    KV ++ P L   + G A D     + 
Sbjct: 27  HGTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERL 86

Query: 290 LKFRMNLYELKENRMMRPKTFSAMLSNLL-YERRFG----------------------PY 400
           L  +  +YEL+    +     S +L+N++ Y +  G                      P 
Sbjct: 87  LAKQCRIYELRNKERISVAAASKILANMVYYYKGMGLSMVCLSWLLFSIRCHYFLLTFPM 146

Query: 401 FIE---PVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKP 571
           F      +I G D      Y  + D     N+   F V G+ S   YG+ ++ ++ ++ P
Sbjct: 147 FFTFQGTMICGWDKKGPGLYYVDSDGTRLSNQM--FSV-GSGSTYAYGVMDSGYKYDMSP 203

Query: 572 DELFETISQALVNAADRDAISG 637
           +E ++   +++ +A  RDA SG
Sbjct: 204 EEAYDLGVRSIYHATHRDAYSG 225


>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 578 VHLASSWAPRELHTYHTAVQNRCPIPQNLQVHLGNQSSPCYRHKVGYH 435
           +H+ S+      H YH A++N  P P  L+ H+  +S    RH    H
Sbjct: 119 LHIDSNNRSIHDHDYHWAIENVIPPPPPLEGHVERESYELGRHDYMRH 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,299,126
Number of Sequences: 59808
Number of extensions: 506600
Number of successful extensions: 1779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)