Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p15
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...   225   3e-59
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    53   2e-07
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    48   6e-06
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    48   6e-06
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    36   0.034
U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   5.2  
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical...    28   6.8  
AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin bet...    28   6.8  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68300-1|CAA92617.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    27   9.1  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.1  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    27   9.1  

>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score =  225 bits (549), Expect = 3e-59
 Identities = 101/190 (53%), Positives = 135/190 (71%)
 Frame = +2

Query: 92  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 271
           MSI++Y GG VVAM G +CV IA+D R G Q  T++T+  KV ++   +YVGL G  +D 
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 272 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 451
           +TV +++ FR NLYEL+ENR ++P+  S M+SNL Y+ RFG YF EP++AGLD   N+PY
Sbjct: 61  RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119

Query: 452 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAI 631
           +C MD IGC + P DFV  GT  E L G+CE  W  N+KPDELFE  +Q++++  +RDA 
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179

Query: 632 SGWGAVVYII 661
           SGWGAVVY I
Sbjct: 180 SGWGAVVYTI 189


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
 Frame = +2

Query: 113 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 292
           G  ++AM+    V + TD R    +   S    K+  +   + V   G A DTQ +    
Sbjct: 23  GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82

Query: 293 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD-PYDNQPYVCNMDL 469
           K+ +++Y + EN+ +     S +    LY  R        ++AG D     Q Y      
Sbjct: 83  KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP--- 138

Query: 470 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 637
           IG     +    SG+ S  + G  ++ W PNL  +E    + QA+  A  RD  SG
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSG 194


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
 Frame = +2

Query: 113 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 289
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 290 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 469
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +  +  V + D 
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169

Query: 470 IGC 478
           IGC
Sbjct: 170 IGC 172


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
 Frame = +2

Query: 113 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 289
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 290 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 469
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +  +  V + D 
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169

Query: 470 IGC 478
           IGC
Sbjct: 170 IGC 172


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 40/163 (24%), Positives = 71/163 (43%)
 Frame = +2

Query: 149 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 328
           + +A D R        S +  K+  +G  +   + G A D Q   + +     LYEL+E 
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 329 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 508
             +     S   +N LY  R     +  ++AG D     P +  +D  G   + +   V 
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199

Query: 509 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 637
           G+ S   YG+ +  ++P +  DE  +   +A+++A  RD+ SG
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242


>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +2

Query: 497 FVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 652
           FV SGT S  + G C+ L E  LK +E+ E+ ++A ++AA R   SG G+ V
Sbjct: 91  FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQR--ASGEGSEV 140


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
 Frame = +2

Query: 113 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 292
           G   V ++G+DC+ I  +K+  I A        K+  +   + +   GL+ D + +  R 
Sbjct: 30  GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88

Query: 293 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 448
           +     Y+L     +     S  ++N   ++RF       P+ I  +I G D +D  P
Sbjct: 89  RIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143


>U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK742.3 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 AMKGQDCVAIATDKRFGIQAQTVSTN 205
           AMK    +AIA     G+QAQT  TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 29  FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 139
           F LITL  FQ+  C ++Y        Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 566 SSWAPRELHTYHTAVQNRCPI 504
           +SW+   L+TY+T   N CP+
Sbjct: 248 TSWSSVALNTYNTCASNMCPV 268


>AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15a protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 559 GLPESFTHTIQLFRTGARYHKIFRFIWATNQVHV 458
           GL E++ HT+ LFRT   +  +  F   +N + +
Sbjct: 95  GLSEAYAHTVNLFRTYFDHSNVVTFTKLSNFIKI 128


>AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin beta
           1A protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 559 GLPESFTHTIQLFRTGARYHKIFRFIWATNQVHV 458
           GL E++ HT+ LFRT   +  +  F   +N + +
Sbjct: 95  GLSEAYAHTVNLFRTYFDHSNVVTFTKLSNFIKI 128


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 158  ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 286
            A  + FG  AQ V    P  F +  T     PGL T   ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216


>Z68300-1|CAA92617.1|  185|Caenorhabditis elegans Hypothetical
           protein T22B3.3 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 539 CEALWEPNLKPDELFETISQALVNAADRD 625
           C ALW+P  KPD +     QA++   D D
Sbjct: 117 CRALWKPETKPDGVIRL--QAVLENEDED 143


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 158  ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 286
            A  + FG  AQ V    P  F +  T     PGL T   ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 512 TCSEQLYGMCEALWEP 559
           TCS+ ++G+C  LW+P
Sbjct: 570 TCSKSVHGVCCGLWDP 585


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 158  ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 286
            A  + FG  AQ V    P  F +  T     PGL T   ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,103
Number of Sequences: 27780
Number of extensions: 369255
Number of successful extensions: 908
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)