Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p14
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)                 29   5.1  
SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 663 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKST 532
           SS ++  FA+  + +CV  L   NLC+   T  + +  CI+  T
Sbjct: 39  SSLLSSYFARARTKNCVFLLHGRNLCSGQNTTPIMDAWCIRNYT 82


>SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)
          Length = 242

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALLNN 565
           +QV+PD   S K   ++N F+ND  E    +  +L    +  + +S R+V   +  LL  
Sbjct: 43  KQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKRSTISSREVQTAVRLLLPA 101

Query: 566 VSVTF 580
              TF
Sbjct: 102 GKTTF 106


>SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 5   GIKMNLYLLLGALTIFSLVY 64
           GI MNL+++LGALT+  + Y
Sbjct: 51  GIMMNLFIVLGALTLTLIAY 70


>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 451 KHVNYSFKF--KRKILVRIDLFAQPIAKSGFDHGHLSGERCRFDQF 320
           +HV Y  KF  +R    R+  F + +A+  +DH  LSG  C  +QF
Sbjct: 178 EHVQYEHKFDGQRSNGDRMRTF-KAMARVNYDHERLSGGSCDTEQF 222


>SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 130 DDDDEHEKQYEQIQKDAVFLFVI 62
           DDD E   Q    Q DAVFLFV+
Sbjct: 124 DDDFESVSQVGSTQSDAVFLFVV 146


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 428 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 556
           L+R+  +F  + I N+++YK   +    N++  R++ +L H L
Sbjct: 12  LRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVL 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,845
Number of Sequences: 59808
Number of extensions: 345407
Number of successful extensions: 872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)