Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p11
         (498 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D557C7 Cluster: PREDICTED: similar to CG12855-PA...   110   1e-23
UniRef50_UPI00015B41CE Cluster: PREDICTED: similar to conserved ...    87   2e-16
UniRef50_Q16KT0 Cluster: Putative uncharacterized protein; n=1; ...    85   1e-15
UniRef50_UPI0000DB7844 Cluster: PREDICTED: similar to CG12855-PA...    80   3e-14
UniRef50_Q7K3N1 Cluster: GH27401p; n=2; Sophophora|Rep: GH27401p...    75   7e-13
UniRef50_UPI0000ECB5AE Cluster: Hermansky-Pudlak syndrome 1 prot...    38   0.17 
UniRef50_UPI0001509E04 Cluster: hypothetical protein TTHERM_0024...    35   0.88 
UniRef50_Q60HF3 Cluster: Hermansky-Pudlak syndrome 1 protein hom...    35   0.88 
UniRef50_Q7PC79 Cluster: Exportin-t; n=6; core eudicotyledons|Re...    33   3.6  
UniRef50_A2EP48 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_A5K288 Cluster: Poly(A) polymerase PAP, putative; n=6; ...    32   6.2  

>UniRef50_UPI0000D557C7 Cluster: PREDICTED: similar to CG12855-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG12855-PA - Tribolium castaneum
          Length = 598

 Score =  110 bits (265), Expect = 1e-23
 Identities = 52/124 (41%), Positives = 83/124 (66%), Gaps = 7/124 (5%)
 Frame = +1

Query: 85  MKALLIFDSVNDLVFSKWDDSFIRHLRNF-SVQDF------EENVSDSVNVSQIFTPIIL 243
           MK LLIFD +ND+V++K DD F  H+  F S+Q F      +E   D   + QIF+PII 
Sbjct: 1   MKCLLIFDHLNDVVYTKCDDKFSTHIYEFASLQGFVNAGDGKERTIDDNALVQIFSPIIT 60

Query: 244 SQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELLDCKTLVQHIC 423
           SQR+M+ QFGN+Y+S+QC+DG  I FDE++ ++F+ + ++ +    + L  C T+V+++C
Sbjct: 61  SQRIMSCQFGNSYTSIQCEDGINICFDEYMGYLFVSVAQEDVQSIKKYLSVCVTIVRYLC 120

Query: 424 GQNI 435
           G ++
Sbjct: 121 GPDV 124


>UniRef50_UPI00015B41CE Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to conserved hypothetical protein -
           Nasonia vitripennis
          Length = 682

 Score = 87.0 bits (206), Expect = 2e-16
 Identities = 33/77 (42%), Positives = 58/77 (75%)
 Frame = +1

Query: 214 VSQIFTPIILSQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELL 393
           + Q+F+PI+ SQ VMA+QFGNTY+SM+C+DGT + FDE++ + F+ +  + ++   R L 
Sbjct: 77  IMQLFSPIVTSQHVMASQFGNTYTSMKCQDGTNMVFDEFMGYTFVYVSNEDVELMRRTLG 136

Query: 394 DCKTLVQHICGQNINLL 444
            C T+++H+CG ++++L
Sbjct: 137 VCVTIIRHLCGPDVSVL 153


>UniRef50_Q16KT0 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 599

 Score = 84.6 bits (200), Expect = 1e-15
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
 Frame = +1

Query: 85  MKALLIFDSVNDLVFSKWDDSF----IRHLRNFSVQDFEENVS----DSVNVSQIFTPII 240
           M+ +LIFD  NDL++  ++D       RH  +  + + E+       D   + QIF+P++
Sbjct: 1   MEGVLIFDQNNDLIYQNFNDGMRAKMTRHAIDLGLMEDEKRDPRKDLDCNVLIQIFSPLV 60

Query: 241 LSQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELLDCKTLVQHI 420
            SQR+M  QF N Y+S+Q ++   + FDE+L ++F+ I    +D   REL  C  L++HI
Sbjct: 61  ASQRIMMCQFDNAYTSVQMENNLNLVFDEFLGYLFLQISTKEVDQVRRELGVCICLLKHI 120

Query: 421 CGQNINLL 444
           CG NI ++
Sbjct: 121 CGPNIYIV 128


>UniRef50_UPI0000DB7844 Cluster: PREDICTED: similar to CG12855-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG12855-PA - Apis mellifera
          Length = 556

 Score = 79.8 bits (188), Expect = 3e-14
 Identities = 35/86 (40%), Positives = 59/86 (68%)
 Frame = +1

Query: 187 EENVSDSVNVSQIFTPIILSQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDC 366
           E+++ +   + Q+F+PI+ SQ VMA+QFGN+Y+SM+C DGT + FDE++ + FI I  D 
Sbjct: 51  EDSILNPNIIMQLFSPIVTSQHVMASQFGNSYTSMRCHDGTNMVFDEFMGYTFIYISMDE 110

Query: 367 LDDAHRELLDCKTLVQHICGQNINLL 444
           ++   R L     +V+H+CG ++ +L
Sbjct: 111 VELMKRTLGVYVAIVRHVCGPDVAVL 136


>UniRef50_Q7K3N1 Cluster: GH27401p; n=2; Sophophora|Rep: GH27401p -
           Drosophila melanogaster (Fruit fly)
          Length = 596

 Score = 75.4 bits (177), Expect = 7e-13
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
 Frame = +1

Query: 85  MKALLIFDSVNDLVFSKWDDSFIRHLRNFSVQD--FEENVS-DSVNVSQIFTPIILSQRV 255
           M  L++F+S ND+V+ K ++   + +R+ +      +   S DS  + QIF+PI+ SQR+
Sbjct: 1   MNGLIVFNSANDVVYQKLNEPLAQKIRSVATTQGLLQSGGSLDSNILLQIFSPIVGSQRI 60

Query: 256 MAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELLDCKTLVQHICGQNI 435
           M  QF N YSS+QC+ G  + F E L   F+ I +  ++   R++    TL ++  G N+
Sbjct: 61  MQCQFDNAYSSLQCEQGFNLVFGELLGFTFLKIGQIPVELLGRQMGVAITLTRYCYGANL 120

Query: 436 NLLHS-PIYQDWLSVLLDC 489
               +  + Q+ L+  LDC
Sbjct: 121 FAAQAGAMQQELLTQCLDC 139


>UniRef50_UPI0000ECB5AE Cluster: Hermansky-Pudlak syndrome 1
           protein.; n=3; Tetrapoda|Rep: Hermansky-Pudlak syndrome
           1 protein. - Gallus gallus
          Length = 676

 Score = 37.5 bits (83), Expect = 0.17
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
 Frame = +1

Query: 85  MKALLIFDSVNDLVFSKWDDSFIRHLRNFSVQDFE-ENVSDSVNVSQIFTPIILSQRVMA 261
           M+ +LI  +  +L+F   D +F+R LR  +    +   + DS+N   +F P+I+S   + 
Sbjct: 1   MRCVLIASTAAELLFYWADAAFLRRLRPPAATAAQGPALEDSLNT--LFAPLIISCTALL 58

Query: 262 AQFGNTYSSMQCKDGTTI-FFDEWLDHVFIIICED---CLDDAHRELLDCKTLVQHICG 426
            +  +TY+  + + G  +     + D ++I +  D     DD  R L   + LV+  CG
Sbjct: 59  EKLSDTYTCFRAERGQHLHVLHMFGDCLYIAVNGDGTESEDDLRRTLFVLRRLVEAHCG 117


>UniRef50_UPI0001509E04 Cluster: hypothetical protein
           TTHERM_00242090; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00242090 - Tetrahymena
           thermophila SB210
          Length = 1079

 Score = 35.1 bits (77), Expect = 0.88
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 88  KALLIFDSVNDLVFSKWDDSFIRHLRNFSVQDFEENVSDSVN 213
           K  L+F S N  V++  +   + HL+NF + D++  VS +VN
Sbjct: 202 KKFLVFVSTNSSVYAFSEKDIVIHLQNFKLYDYQNRVSFNVN 243


>UniRef50_Q60HF3 Cluster: Hermansky-Pudlak syndrome 1 protein
           homolog; n=11; Euteleostomi|Rep: Hermansky-Pudlak
           syndrome 1 protein homolog - Macaca fascicularis (Crab
           eating macaque) (Cynomolgus monkey)
          Length = 667

 Score = 35.1 bits (77), Expect = 0.88
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +1

Query: 85  MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
           MK +L+     +++F   DD F   LR  F   + EE    ++   +S +  P+I+S   
Sbjct: 1   MKCVLVATEGAEVLFYWTDDEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60

Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
           M  +  +TY+    ++G +++
Sbjct: 61  MLEKLSDTYTCFSTENGNSLY 81


>UniRef50_Q7PC79 Cluster: Exportin-t; n=6; core eudicotyledons|Rep:
            Exportin-t - Arabidopsis thaliana (Mouse-ear cress)
          Length = 988

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 142  DSFIRHLRNFSVQDFEENVSDSVNVSQIFTPIILSQRVMAAQFGNTY 282
            ++F  +   +SV D   N SD+ N   +F  II +Q+VM  +FGNT+
Sbjct: 887  EAFATNCCLYSVLDKSFNFSDA-NTHALFGEIITAQKVMYEKFGNTF 932


>UniRef50_A2EP48 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 988

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 169 FSVQDFEENVSDSVNVSQIFTP 234
           F ++DFE N+SD+ N  ++FTP
Sbjct: 98  FGLEDFERNISDNFNTEEMFTP 119


>UniRef50_A5K288 Cluster: Poly(A) polymerase PAP, putative; n=6;
           Plasmodium|Rep: Poly(A) polymerase PAP, putative -
           Plasmodium vivax
          Length = 649

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 160 LRNFSVQDFEENVSDSVNVSQIFTP 234
           LRNFSV D E+N+ D ++V  I TP
Sbjct: 373 LRNFSVWDPEKNIKDKLHVMPIITP 397


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,144,562
Number of Sequences: 1657284
Number of extensions: 9933819
Number of successful extensions: 22648
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22642
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)