Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p11
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   6.3  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.3  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 331  TTHQKILLYHLYTAWRSMCYQIVPP 257
            T    +L+Y+ Y AWR +C   + P
Sbjct: 1170 TRSDLVLMYYAYCAWREICLSPLGP 1194


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 115 NDLVFSKWDDSFIRHLRNFSVQDFEENVSDSVNVSQIFTPIILSQRVMAAQFGNTYSSMQ 294
           ND  FS+   +  R LRNF      +++ DS + S +  P+  S+  +  +  +  + +Q
Sbjct: 565 NDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDLPVDSSKYTLVGKTQSNSNLLQ 624


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 187 EENVSDSVNVSQIFTPIILSQRV 255
           E+N+ +S NVS +F P ++  +V
Sbjct: 918 EKNLMNSKNVSTVFAPTLMRDKV 940


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +1

Query: 352  ICEDCLDDAHRELLDCKTLVQH----ICGQNINLLHSPIYQDWLS 474
            ICE C     R       L  H    +CG  ++++H   Y++W S
Sbjct: 1252 ICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKEWFS 1296


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 QCKRVSDIYTHYTIAEGYGGTIW 272
           Q K  SDIY  YT++ G    IW
Sbjct: 385 QSKFSSDIYATYTLSHGGPSYIW 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,066
Number of Sequences: 5004
Number of extensions: 45751
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)