Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p11
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0470 - 17551368-17552330,17552420-17552920                       29   2.1  
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432...    29   2.1  
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   2.7  
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664...    28   3.6  
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575     28   4.8  

>08_02_0470 - 17551368-17552330,17552420-17552920
          Length = 487

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 253 VMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELL-----DCKTL 408
           VMA +  +   S+Q +  + + F   + H+ II    CLD  HR L+     DC+T+
Sbjct: 99  VMAGRLADKIRSVQARIDSYLLFLPLISHIDII---HCLDQIHRMLISTGDGDCRTM 152


>05_06_0119 +
           25742277-25742434,25742976-25743061,25743146-25743223,
           25743919-25744031,25744094-25744171,25744941-25744949,
           25744981-25745082,25745165-25745714,25745941-25746146,
           25746868-25747031,25747157-25747310
          Length = 565

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 373 DAHRELLDCKTLVQHICGQNINLLHSPIYQ-DWLSVLLDCRT 495
           DA  +L  C +L QH     I+L  SPI Q D +   LDC T
Sbjct: 227 DAFAQLASCNSLRQHTSSPVISLDVSPIKQRDHVDSELDCGT 268


>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 301 DGTTIFF--DEWLDHVFIIICEDCLDD 375
           DG ++F   D W+DHV + +CED L D
Sbjct: 240 DGISLFAATDVWVDHVSMSMCEDGLID 266


>02_02_0716 -
           13264983-13265195,13265219-13265968,13266307-13266463,
           13266542-13266582
          Length = 386

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 364 CLDDAHRELLDCKTLVQHICGQNINLLHSPIYQDWLSVLL 483
           CL   H  L+D    V     +  NLLH P    W+S +L
Sbjct: 15  CLKHRHGNLMDGSAAVATKYRRQTNLLHDPEVSLWMSFVL 54


>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
          Length = 812

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 292 QCKDGTTIFFDEWLDHV--FIIICEDCLDDAHRELLD 396
           +CK  T+    EWLD++   +   +D LDD   E L+
Sbjct: 57  ECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALE 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,152
Number of Sequences: 37544
Number of extensions: 263400
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)