Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p11
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29538| Best HMM Match : DUF729 (HMM E-Value=1.7)                    45   4e-05
SB_34123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15066| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               27   8.6  
SB_5739| Best HMM Match : PAN (HMM E-Value=0.00013)                    27   8.6  

>SB_29538| Best HMM Match : DUF729 (HMM E-Value=1.7)
          Length = 534

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
 Frame = +1

Query: 85  MKALLIFDSVN-DLVFSKWDDSFIRHLRNFSVQDFEENVS----DSVNVSQI---FTPII 240
           MKA ++ +S+  D++F   D+ F +H+   +V+      S    DS+++S I   F+P+I
Sbjct: 1   MKATVVVNSMTIDILFLWGDEVFAKHIHKVAVESGFTKESFQGLDSIDLSSIAHIFSPMI 60

Query: 241 LSQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELLDCKTLVQH 417
            S   M    GN Y S+ C+DGT   F ++ +  F  I      +   E L  K  V H
Sbjct: 61  ASFSHMN-DLGNPYQSVTCQDGTLFVFRQFDNLTFFAISNS--GEESEEFLQRKLSVVH 116


>SB_34123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 214 VSQIFTPIILSQRVMAAQFGNTYSSMQCKDGTTIFFDE 327
           V + F P+ ++ + +   FGN YS +  K+      +E
Sbjct: 26  VEKTFRPVTVAMKFLGLYFGNPYSGVDLKENAVAPLNE 63


>SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 224  YLHPLYYRRGLWRHNLVTHTPPC 292
            +LHP+YY RG +++  V+ +  C
Sbjct: 953  FLHPIYYARGGFQYQTVSTSRTC 975


>SB_15066| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 338

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 277 TYSSMQCKDGTTIFFDEWLDHVFII 351
           TY   QCKD   +  D+ +D++ II
Sbjct: 23  TYDKKQCKDNNNLVKDDEVDYISII 47


>SB_5739| Best HMM Match : PAN (HMM E-Value=0.00013)
          Length = 126

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 277 TYSSMQCKDGTTIFFDEWLDHVFII 351
           TY   QCKD   +  D+ +D++ II
Sbjct: 84  TYDKKQCKDNNNLVKDDEVDYISII 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,540
Number of Sequences: 59808
Number of extensions: 336164
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)