Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p11
(498 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U96721-1|AAC52074.1| 324|Homo sapiens alternative Hermansky-Pud... 31 1.7
U79136-1|AAB70662.1| 676|Homo sapiens Hermansky-Pudlak syndrome... 31 1.7
U65676-1|AAB17869.1| 700|Homo sapiens HPS protein. 31 1.7
BC000175-1|AAH00175.1| 324|Homo sapiens Hermansky-Pudlak syndro... 31 1.7
AL139243-8|CAI14153.1| 324|Homo sapiens Hermansky-Pudlak syndro... 31 1.7
AL139243-7|CAI14152.1| 700|Homo sapiens Hermansky-Pudlak syndro... 31 1.7
AF450133-1|AAL50684.1| 700|Homo sapiens Hermansky-Pudlak syndro... 31 1.7
Y09763-1|CAA70903.1| 506|Homo sapiens GABRE protein. 29 6.8
Y09765-1|CAA70904.1| 506|Homo sapiens GABA receptor epsilon sub... 29 9.0
Y07637-1|CAA68914.1| 505|Homo sapiens putative GABA-gated chlor... 29 9.0
U92283-1|AAB94645.1| 506|Homo sapiens GABA-A receptor epsilon s... 29 9.0
U66661-1|AAB49284.1| 506|Homo sapiens GABA-A receptor epsilon s... 29 9.0
AL022313-7|CAB62991.1| 149|Homo sapiens protein ( (beta-1,4-)-g... 29 9.0
>U96721-1|AAC52074.1| 324|Homo sapiens alternative Hermansky-Pudlak
syndrome associated protein protein.
Length = 324
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>U79136-1|AAB70662.1| 676|Homo sapiens Hermansky-Pudlak syndrome
protein protein.
Length = 676
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>U65676-1|AAB17869.1| 700|Homo sapiens HPS protein.
Length = 700
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>BC000175-1|AAH00175.1| 324|Homo sapiens Hermansky-Pudlak syndrome
1 protein.
Length = 324
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>AL139243-8|CAI14153.1| 324|Homo sapiens Hermansky-Pudlak syndrome
1 protein.
Length = 324
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>AL139243-7|CAI14152.1| 700|Homo sapiens Hermansky-Pudlak syndrome
1 protein.
Length = 700
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>AF450133-1|AAL50684.1| 700|Homo sapiens Hermansky-Pudlak syndrome
protein.
Length = 700
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ +++F D F LR F + EE ++ +S + P+I+S
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++G ++
Sbjct: 61 MLEKLSDTYTCFSTENGNFLY 81
>Y09763-1|CAA70903.1| 506|Homo sapiens GABRE protein.
Length = 506
Score = 29.5 bits (63), Expect = 6.8
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 321 KKYCCTIFTLHGGVCV-TKLCRHNPLR*YNGCKYLRHVYTVTYIFFKVLY 175
KKY C + G +LC H Y Y R V+ VT+ FF VLY
Sbjct: 454 KKYFCMVPDCEGSTWQQARLCIHV----YRLDNYSRVVFPVTFFFFNVLY 499
>Y09765-1|CAA70904.1| 506|Homo sapiens GABA receptor epsilon
subunit protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 321 KKYCCTIFTLHGGVCVT-KLCRHNPLR*YNGCKYLRHVYTVTYIFFKVLY 175
KKY C + G +LC H Y Y R V+ VT+ FF VLY
Sbjct: 454 KKYFCMVPDCEGSTWQQGRLCIHV----YRLDNYSRVVFPVTFFFFNVLY 499
>Y07637-1|CAA68914.1| 505|Homo sapiens putative GABA-gated chloride
channel protein.
Length = 505
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 321 KKYCCTIFTLHGGVCVT-KLCRHNPLR*YNGCKYLRHVYTVTYIFFKVLY 175
KKY C + G +LC H Y Y R V+ VT+ FF VLY
Sbjct: 453 KKYFCMVPDCEGSTWQQGRLCIHV----YRLDNYSRVVFPVTFFFFNVLY 498
>U92283-1|AAB94645.1| 506|Homo sapiens GABA-A receptor epsilon
subunit protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 321 KKYCCTIFTLHGGVCVT-KLCRHNPLR*YNGCKYLRHVYTVTYIFFKVLY 175
KKY C + G +LC H Y Y R V+ VT+ FF VLY
Sbjct: 454 KKYFCMVPDCEGSTWQQGRLCIHV----YRLDNYSRVVFPVTFFFFNVLY 499
>U66661-1|AAB49284.1| 506|Homo sapiens GABA-A receptor epsilon
subunit protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 321 KKYCCTIFTLHGGVCVT-KLCRHNPLR*YNGCKYLRHVYTVTYIFFKVLY 175
KKY C + G +LC H Y Y R V+ VT+ FF VLY
Sbjct: 454 KKYFCMVPDCEGSTWQQGRLCIHV----YRLDNYSRVVFPVTFFFFNVLY 499
>AL022313-7|CAB62991.1| 149|Homo sapiens protein (
(beta-1,4-)-glycoprotein ).).
Length = 149
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 85 MKALLIFDSVNDLVFSKWDDSFIRHLR-NFSVQDFEENVSDSVN--VSQIFTPIILSQRV 255
MK +L+ + +F D+ F L+ F + EE ++ +S + P+I+S
Sbjct: 1 MKCILVAIEGTEALFYWTDEEFEESLQLKFGQSENEEEELPALQDQLSPLLAPVIISSMT 60
Query: 256 MAAQFGNTYSSMQCKDGTTIF 318
M + +TY+ ++ +++
Sbjct: 61 MLEKLSDTYTCFSMENSNSLY 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,054,047
Number of Sequences: 237096
Number of extensions: 1462295
Number of successful extensions: 2472
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2472
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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