Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p11
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    31   0.35 
AL110485-19|CAB60367.2|  529|Caenorhabditis elegans Hypothetical...    31   0.46 
AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical ...    28   3.3  
U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical p...    28   4.3  

>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 139 DDSFIRHLRNFSVQDFEENVSDSVNVSQIFTPIILSQRVMAAQFGNTYSSMQC 297
           DD   R   N+   +F+EN SD V  +++F P    + V    + N   +  C
Sbjct: 236 DDLLKRDTFNYCAMNFDENCSDPVEFAKVFQPEYSGEDVYKLSYQNFKITCNC 288


>AL110485-19|CAB60367.2|  529|Caenorhabditis elegans Hypothetical
           protein Y46G5A.24 protein.
          Length = 529

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +1

Query: 109 SVNDLVFSKWDDSFIRHLRNFSVQDFEENVSDSVNVSQIFTPIILSQRVMAAQFGNTYSS 288
           +V +  +  W D  +  ++ +  +D +   S     S+ +T  + +QR++A  FG     
Sbjct: 45  TVGEEEYKHWFDG-LGFMQRYHFEDGKMFYSARYLESEAYTKTVEAQRIVAGTFGTLSFP 103

Query: 289 MQCKDGTTIFFDEWLDH 339
             CK   + +F E+++H
Sbjct: 104 DPCKTIFSKYFSEFMNH 120


>AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical
           protein Y102A5C.8 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +1

Query: 109 SVNDLVFSKWDDSFIRHLRNFSVQDFEENVSDSVNVSQIFTPIILSQRVMAAQFGNTYSS 288
           SVN L +  +    + HL  FSV   E  +SD+V +  +   ++ S    A Q  N  + 
Sbjct: 136 SVNTLSYFTFPIEHLFHLCKFSVPLVELKISDAVKIRDV---LLKSVHFEAGQI-NVKNK 191

Query: 289 MQCKDGTTIFFDEWLDHVF 345
           +Q  D   +F  E+ D++F
Sbjct: 192 IQ-DDVLRVFNPEFNDNIF 209


>U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical
           protein F46F11.10 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 163 RNFSVQDFEENVSDSVNVSQIFTPII 240
           +N S+QD E++   S+  S +F PI+
Sbjct: 214 KNSSIQDLEKSKLQSIRKSHVFNPIV 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,019
Number of Sequences: 27780
Number of extensions: 261475
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)