Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p10
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   5.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   5.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   5.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 379 VLTSSSYLFLTNLCNVLRSWCY 314
           V  +SS   LTN  NV+  W Y
Sbjct: 23  VRENSSGKNLTNTLNVIHKWKY 44


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 232 KHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKT 357
           K C+    +L E   RK Y +   R  +S  + R Y    +T
Sbjct: 21  KLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRET 62


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 232 KHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKT 357
           K C+    +L E   RK Y +   R  +S  + R Y    +T
Sbjct: 21  KLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRET 62


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 232 KHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKT 357
           K C+    +L E   RK Y +   R  +S  + R Y    +T
Sbjct: 21  KLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRET 62


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 232 KHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKT 357
           K C+    +L E   RK Y +   R  +S  + R Y    +T
Sbjct: 21  KLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRET 62


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 322 WCYHGGGSQ 296
           WCY+GG ++
Sbjct: 954 WCYYGGDAR 962


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,250
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)