Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p05
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   1.9  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.4  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   3.4  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   4.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.4  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 367 VITCRCITSLLSSNMSCVM 423
           VIT RCI+ LL+S++ C++
Sbjct: 37  VITARCISVLLASSVCCIL 55


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 234 RPQKTYNSKTRDPVVIERSNLVNISKLI 317
           +PQK  N    D  ++ +  L+ +SKL+
Sbjct: 250 KPQKNTNDSNNDHTLLSQDQLIELSKLV 277


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 177 PIERSSSSKDERWPELLISRPQKTYNSKTRDPVVIERSNLVNISKLIVKELI 332
           P   + SS+  +WP +   R +  YN       +I+  N  N +K   KE++
Sbjct: 37  PFGLNPSSRISQWPRITFIRAKDNYNPAEELCQLIDEQNAHNEAKHQSKEIM 88


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 201 KDERWPELLISRPQKTYNSKTRD--PVVIERSNLVNISKLIVKELIEQSLRFGRMLDSDH 374
           KDE   ELLI+ P   Y  K ++    VI   NL   +   + EL+E ++    +  S++
Sbjct: 408 KDEYGKELLITSPTVPYRIKYKNGREEVISNPNLFPTNHQGISELLEPTVDATIITPSEY 467

Query: 375 L 377
           L
Sbjct: 468 L 468


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 CRSITNIIYVFCQISSHRKI 190
           C SIT I+Y FC+I  ++ +
Sbjct: 84  CNSITVILYQFCKIRGYKAV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,778
Number of Sequences: 5004
Number of extensions: 53534
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)