Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p05
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229     29   2.6  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    29   4.6  

>07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229
          Length = 116

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 590 RQSQPSPSAAHCCLHSWKISDTGRDIGCLRRI 495
           R   P  +A   C++  K+S + R IGC RR+
Sbjct: 27  RSGPPMVTACVSCVNDGKLSPSSRQIGCRRRL 58


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 252 YMFFVVAISEVLAIFHLLKMKIFRWDEI*QKT*MMLVILLHHFLLQMPY 106
           Y+ FV+ +S      H+ ++KI+  +E  Q +   +V LL HFL  +P+
Sbjct: 478 YVSFVILLSVSGVPAHIDEIKIYSHEEANQHS-STMVFLLGHFLSSIPF 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,230
Number of Sequences: 37544
Number of extensions: 332402
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)