Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p05
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   3e-30
SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9)                     28   8.1  
SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6)                    28   8.1  

>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score =  128 bits (310), Expect = 3e-30
 Identities = 55/120 (45%), Positives = 86/120 (71%)
 Frame = +3

Query: 282 ERSNLVNISKLIVKELIEQSLRFGRMLDSDHLPLHHFFIVLEHVMRHXXXXXXXXXXXXX 461
           ER NL+NI+KL +K LIE +L  G+++  +H P   FF+++E+++RH             
Sbjct: 41  ERLNLLNIAKLCIKTLIESALEVGKVIGEEHEPFQQFFVIIENILRHGLKLKRNLLGQRR 100

Query: 462 ELWDILQMVEKYSPEAADITASVRDLPTVKTAMGRARAWLRLALMQKRLADYLRILLEHR 641
           + W  L+ +EK +PE+A+IT SVR+LP++KT+ G+ RAW RLALMQK+LADY+RI++E++
Sbjct: 101 DYWAALEALEKIAPESAEITNSVRNLPSIKTSHGKGRAWTRLALMQKKLADYIRIIVENK 160


>SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
 Frame = +3

Query: 345 RFGRMLDSDHLPLHHFFIVLEHVMRHXXXXXXXXXXXXXELWDILQMVEKYSPEAAD--I 518
           R+   L+ D LP   FF+VL HV+ +              + D +  V+ Y PE     I
Sbjct: 155 RYILALEDDALPNEDFFVVLNHVIHNHLDYKISKGEKTMNM-DNITYVKLYHPERLQGFI 213

Query: 519 TASVRDLPT---VKTAMGRARAWLRLALMQKRLADYLRILL 632
           +     LP    + T +G    ++ L  + K+   +  +LL
Sbjct: 214 SLESERLPELFGLSTVLGTLLFYIYLKTLAKKTFSHSTVLL 254


>SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +3

Query: 540 PTVKTAMGRARAWLRLALMQKRLADYLRILLEHREDTLEEYFEPHALM 683
           P V   + + R W+ +A+ +  L  Y+R+ L +   ++++Y+  +A M
Sbjct: 92  PQVTNDLDKGRVWIFMAIKECVLESYMRMFL-NEPKSVKKYYSKYAFM 138


>SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9)
          Length = 631

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 442 DSSDLKRSYGIFFKWLRSIRLRQPISRPVSEIFQL 546
           D+ DL R YG         R+   + RP+SE+FQL
Sbjct: 516 DAIDLVRKYGFL---TNVYRIADVVGRPLSEVFQL 547


>SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 442 DSSDLKRSYGIFFKWLRSIRLRQPISRPVSEIFQL 546
           D+ DL R YG         R+   + RP+SE+FQL
Sbjct: 533 DAIDLVRKYGFL---TNVYRIADVVGRPLSEVFQL 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,622
Number of Sequences: 59808
Number of extensions: 394361
Number of successful extensions: 1040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)