Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p04
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   198   3e-52
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   198   6e-52
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   0.82 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   0.82 
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.3  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   5.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   7.6  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  198 bits (484), Expect = 3e-52
 Identities = 102/176 (57%), Positives = 123/176 (69%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA   KKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV + A PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
           +G  KG K T          +S    RK+ AR   +KV+ AL+ QF  GRL A V+
Sbjct: 121 MG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVS 170


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  198 bits (482), Expect = 6e-52
 Identities = 102/176 (57%), Positives = 123/176 (69%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA   KKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV + A PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
           +G  KG K T          +S    RK+ AR   +KV+ AL+ QF  GRL A V+
Sbjct: 121 MG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVS 170


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +1

Query: 124 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
           P  NT + PQ     RSR   T  R+L   +G  S  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 304 RTKTLVKNAIVVVXATPFRQWYE 372
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 43   RDHWHKRRATGGKRAPIXKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 216
            RD  +K +  G       K+ +   EL    +N  +  Q+   + S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 217  GNFSWGSECSTRKTRI 264
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 46  DHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 207
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 60   LMPVIPTNTHLSWVKKKK 7
            L+PVI T THLS V+ KK
Sbjct: 1208 LIPVITTYTHLSEVENKK 1225


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 229 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLPLGR 399
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDR 308


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 290 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 204
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   FFFFFFDPTKMGISRDHWHKRRATGGKRAPIXKKRKYEL 117
           F   FF   ++G +  +  K  +  GK AP+  K+K+ L
Sbjct: 273 FLSIFFKEVRVGNTATNVRKPESFTGKTAPLSFKQKFML 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,060
Number of Sequences: 5004
Number of extensions: 42736
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)