Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p04
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 202 1e-52
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 188 3e-48
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.21
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.36
01_02_0013 + 10162478-10163581 30 1.1
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 3.4
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.4
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 4.4
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 202 bits (494), Expect = 1e-52
Identities = 105/185 (56%), Positives = 128/185 (69%), Gaps = 9/185 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ KKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV V A PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 388 PLGRXK--------GAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRL 543
+GR K A+ E A K+S RK RQ+ ++ ++ QF +GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180
Query: 544 LACVA 558
LAC++
Sbjct: 181 LACIS 185
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 188 bits (457), Expect = 3e-48
Identities = 105/202 (51%), Positives = 128/202 (63%), Gaps = 26/202 (12%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ KKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV V A PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 388 PLGRXKGA-------------------------KLTEAXEAIINKKRSXKTARKYLARQR 492
+GR K A K +A K+S RK RQ+
Sbjct: 121 DIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQ 180
Query: 493 LAKVEGALKXQFHTGRLLACVA 558
++ ++ QF +GRLLAC++
Sbjct: 181 GRTLDAHIEEQFGSGRLLACIS 202
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 103 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 237
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 157 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 336
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 337 V 339
V
Sbjct: 436 V 436
>01_02_0013 + 10162478-10163581
Length = 367
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 137 PGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRP 316
PGS + F E +S RC P+ G R + A SL + ++HL +C RP
Sbjct: 226 PGSTVYSGIGFGSP-EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARP 282
Query: 317 L 319
L
Sbjct: 283 L 283
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 211 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA-IVVVXATPF 357
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA IVV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 140 GSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 298
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 43 RDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHS 165
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,132
Number of Sequences: 37544
Number of extensions: 307353
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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