Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p04
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              217   4e-57
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           53   2e-07
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   2.6  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    27   7.9  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  217 bits (531), Expect = 4e-57
 Identities = 103/157 (65%), Positives = 121/157 (77%)
 Frame = +1

Query: 88  PIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 267
           P+  KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 268 DVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLPLGRXKGAKLTEAXEAIINK 447
           DVVYNASNNELVRTKTLVKN IV V +TPFRQWYE+HY +P+GR K  + TE  + I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 448 KRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
           KRS    RK  AR+  AKV   ++ QF TGRL ACV+
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVS 160


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/77 (29%), Positives = 46/77 (59%)
 Frame = +1

Query: 148 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 327
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 328 AIVVVXATPFRQWYESH 378
           +IV V   PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  RATGGKRAPIXKKRKYELGRPAANTRLGP 150
           R  GG R P+ +   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 377 CDSYHCLNGVAXTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 237
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 61  RRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 198
           RR  GG R+P  + R+    R     R  P      RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 22  PTKMGISRDHWHKRRATGGKRAPIXKKRK-YELGRPAANTRLGPQRIHSV 168
           P    +S D W K++    K+  I KKR+  +    A    LG QR+  +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 125 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 250
           P ++P   L  +TP VHVV +    R V   +TS+  +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,661
Number of Sequences: 59808
Number of extensions: 346411
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)