Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p04
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 287 2e-77
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 287 2e-77
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 287 2e-77
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 287 2e-77
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 226 4e-59
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 52 2e-06
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 31 3.7
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 8.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 287 bits (703), Expect = 2e-77
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LGR KGAKLT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 287 bits (703), Expect = 2e-77
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LGR KGAKLT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 287 bits (703), Expect = 2e-77
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LGR KGAKLT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 287 bits (703), Expect = 2e-77
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LGR KGAKLT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 226 bits (553), Expect = 4e-59
Identities = 114/176 (64%), Positives = 131/176 (74%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LGR KGAKLT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 156
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 51.6 bits (118), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +1
Query: 415 LTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
LT E I+NKKRS K +KY R++ AK+ L+ QF G+LLAC+A
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 48
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 30.7 bits (66), Expect = 3.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 325 NAIVVVXATPFRQWYESHYTLPLGRXKGAKLT 420
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 260 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 162
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,741,990
Number of Sequences: 237096
Number of extensions: 1744085
Number of successful extensions: 3262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3262
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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