Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p04
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 245 2e-65
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.43
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.43
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.43
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 29 3.0
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 5.3
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 245 bits (599), Expect = 2e-65
Identities = 115/176 (65%), Positives = 136/176 (77%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ V A PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 391 LGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
L R K AKL+E AI+NKKRS T +KY RQ+ A V+ L QF+TGRLLA ++
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARIS 176
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 303
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 146 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 286
++ E+TP + EI+ST VW V ++ K +S C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 241 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQ 363
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 302 TNSLLDALYTTSMIRVLRV 246
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,587
Number of Sequences: 27780
Number of extensions: 250280
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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