Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p04
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   203   5e-53
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   198   2e-51
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   2.8  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   4.9  
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    27   6.5  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  203 bits (496), Expect = 5e-53
 Identities = 107/187 (57%), Positives = 131/187 (70%), Gaps = 11/187 (5%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+    KKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
           LDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV V A PF+QWY SHY +
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 388 PLGR-XKGAKLT-----EAXEAII----NKKRSXKTARKYLARQRLAKVEGALKXQFHTG 537
            LGR  K A  T     E  EA +      K+S    RK  +RQ    ++  ++ QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 538 RLLACVA 558
           RLLAC++
Sbjct: 181 RLLACIS 187


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  198 bits (484), Expect = 2e-51
 Identities = 103/177 (58%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIXKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+    KKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
           LDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV V A PF+Q Y  HY +
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 388 PLGRXKGAKLTEAXEAIINKKRSXKTARKYLARQRLAKVEGALKXQFHTGRLLACVA 558
            +GR K  +     E     K+S    RK   RQ    ++  L+ QF +GRLLAC+A
Sbjct: 121 DIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIA 173


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 178 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 339
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 308 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 177
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 10  FFFDPTKMGISRDHWHKRRATGGK--RAPIXKKRKYELGRPAANTRLGPQR 156
           F  DP K    ++ W KRR   G+  R     K++ +LGR     R+  +R
Sbjct: 206 FAMDPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,177
Number of Sequences: 28952
Number of extensions: 234700
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)