Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p02
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 32 0.44
Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 30 1.8
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 29 3.1
AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine r... 29 3.1
AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical ... 28 5.4
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 7.1
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 7.1
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.44
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 439 GAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL---YIMIAT 609
G DYRY + +IL + + F+I+M L + ++ F S + Y M+ T
Sbjct: 40 GMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTHYQMVFT 99
Query: 610 VWSLKNNLTSFYASNLQSIQVV 675
+W + N T + S L+ QVV
Sbjct: 100 LWCIGNTNTCIFISLLKRHQVV 121
>Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical
protein C31A11.10 protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 445 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 615
Y +YR +C++ + ++S I+ G+ C ++D+ L +SF+CA+ T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171
Query: 616 SLKNNLTSFYASNLQSIQVVPF 681
L +T+F SN+ VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 469 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 648
SCY +I+ + + F KLV S+ F L I+ A+VW L N+L +
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158
Query: 649 SNLQSIQVVP 678
S +Q ++P
Sbjct: 159 SEIQDAILIP 168
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +1
Query: 100 NVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 279
NV + ++ +M + Y+ YW +F VA+ L T F+T EA V + +
Sbjct: 344 NVVMWLLVVCIIMFMIIMLLYVYI-YWLRSTF---VAIEERALPTEFET-EASLFVAKQR 398
Query: 280 LFQAMYFSNVLLNYVV 327
FQ+ Y+ LL+ V
Sbjct: 399 SFQSAYYDPALLDVSV 414
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 144 HVSHQHGRVGAQR-HVNVRQRSIGKLHFCVGR 52
HVSH HGR+G R H R + G+ H + R
Sbjct: 14 HVSHGHGRIGKHRKHPGGRGNAGGQHHHRINR 45
>AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 57 protein.
Length = 280
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +1
Query: 445 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 624
Y +R S Y+V+ F+S+ F L ++D + +F C + W +
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175
Query: 625 NNLTSFYASNLQSIQVV 675
+ F S+L +I V
Sbjct: 176 EQVVFFVISSLSTILFV 192
>AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical
protein Y119C1B.12 protein.
Length = 166
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +1
Query: 46 RLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATF------NEFEYLQYW 180
R+ T+T + + L+ V L + A+++GY+ F N+ + L YW
Sbjct: 88 RIRTETDINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYW 138
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 635 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 525
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 635 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 525
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,744
Number of Sequences: 27780
Number of extensions: 310260
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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