Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o23
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.12 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = -2

Query: 311 MNSSRKNIEKMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENK 132
           +N  ++  E+  FT   L +L   F+K  + +         K+    S +++W K    K
Sbjct: 122 VNPRKQRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAK 181

Query: 131 KHNESISSRNNCASKHTFS 75
              +    +N  AS+ T S
Sbjct: 182 CRQQLQQQQNKSASRTTTS 200


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 445 KCRYLASSLSTLDEG-LQNGWDIFLRPMFGMPLMLYVLLRT-DYKNESDVINENNLITQI 618
           K R L + + +L  G +  G D+    +  +  +L+V L    ++N   VIN  +    +
Sbjct: 416 KVRLLQTLIISLVIGAIYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVFSGELPV 475

Query: 619 FVQFFYNLICDKSVFFVHKT 678
           F+Q   N +   S++F+ KT
Sbjct: 476 FLQEHRNGMYRPSIYFISKT 495


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 445 KCRYLASSLSTLDEG-LQNGWDIFLRPMFGMPLMLYVLLRT-DYKNESDVINENNLITQI 618
           K R L + + +L  G +  G D+    +  +  +L+V L    ++N   VIN  +    +
Sbjct: 416 KVRLLQTLIISLVIGAIYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVFSGELPV 475

Query: 619 FVQFFYNLICDKSVFFVHKT 678
           F+Q   N +   S++F+ KT
Sbjct: 476 FLQEHRNGMYRPSIYFISKT 495


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,732
Number of Sequences: 336
Number of extensions: 4162
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)