Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19o23
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.29
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.1
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 3.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 6.3
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 6.3
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 6.3
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 6.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.3
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 115 IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 201
I+SLC LF+K+ N + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 DEID--SLCFLFSKYFNQSLIVDGKGLTF 189
DEID SLC L K+F + V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 397 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 513
+C+S +K QC+ C+C R + ++L + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 258
V FE Q L DE+ + FL + ++ VD T E K + ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 367 PTPAPDVDEIMCQSCKPANKI 429
P P P VD C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 82 VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 261
+ F R ++SLCFLF NQ D L F N+ ++++ + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +1
Query: 604 LITQIFVQFFYNLICDKSVFFVHKTRHVRAICQRMQKSNHRI 729
+++ IF+ FF+ +C V+F H + +R +H +
Sbjct: 31 ILSVIFINFFFFYLCRCCVYFYHTLENQEGDDERPLIQHHMV 72
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 392 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 300
S+TSGA L V K +M L G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 246 QQHRQHTQCKKHFFDIFARRV 308
Q H+ H K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 634 YNLICDKSVFFVHKTRH 684
+NL CDK +F+VH H
Sbjct: 133 HNLKCDKVIFYVHGGAH 149
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 603 FDYTDICAIFL*LDLRQKRILCTQNATCACHLSKNAKKQPS 725
F+ +D+ A+ + ILCT+N TC ++ K++ S
Sbjct: 462 FESSDLAALDIAWTADNSLILCTRNGTCWKRELRSKKREKS 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,509
Number of Sequences: 5004
Number of extensions: 66532
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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