Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o23
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.71 
07_01_1162 - 11002193-11002274,11002628-11002662,11004285-110044...    31   0.94 
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    29   2.9  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   6.6  
05_02_0055 + 6185448-6185473,6186336-6186678,6187374-6187523,618...    28   6.6  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 28   8.7  
01_01_0155 - 1362710-1363267                                           28   8.7  

>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 265 HNVKNIFSIFLRDEFIKQVP---QFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKI 429
           HN+     +F+  E IKQ P     +  MQ++ T+  PT  P +D ++  +  P + I
Sbjct: 457 HNISEAKEVFV--EGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDI 512


>07_01_1162 -
           11002193-11002274,11002628-11002662,11004285-11004419,
           11004521-11005048
          Length = 259

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +1

Query: 157 SLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSIFLRDEFIKQVPQFRT 336
           +L+ DG  L    +F KC+  +++ +    +  D +  +KN  S+F +D F  ++  + T
Sbjct: 194 ALVSDGPNLDAVVDFLKCVPCLETLYIT--SRPDKV--IKNARSVFAKDIFYLKIRYYAT 249

Query: 337 IMQYL 351
           +  Y+
Sbjct: 250 MSDYV 254


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 553 LLRTDYKNESDVINENNLITQIFVQFFYNLICDKSVFFV 669
           L + DY N  D++N+ N      +  FY+L+  + + FV
Sbjct: 113 LKKQDYLNPGDIMNDQNQNITWSLNIFYSLVFAQGIMFV 151


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 356 HITIRRRHPTWTRSCVSRASPQT 424
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>05_02_0055 +
           6185448-6185473,6186336-6186678,6187374-6187523,
           6187640-6187906,6189187-6189276,6189802-6190136,
           6190777-6190864
          Length = 432

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 474 HPRRGLAKWLGHFFKTHVWHASHVV 548
           HPR  + KW G  F++H+W +  VV
Sbjct: 3   HPR--VTKWYGKVFRSHLWGSPAVV 25


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 504 GHFFKTHVWHASHVVRVA 557
           G +FK+H W A+H++ +A
Sbjct: 447 GFYFKSHRWRAAHIIVIA 464


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 475 CSARTPSICICTRNIEFCLRAC 410
           CS   P IC C   +E C  AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,054
Number of Sequences: 37544
Number of extensions: 386206
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)