Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o20
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    60   4e-08
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    50   8e-05
UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus...    48   3e-04
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    38   0.20 
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   5.6  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 31/52 (59%), Positives = 33/52 (63%)
 Frame = +1

Query: 583 SKLKIAXXXXXXXXXXXXXXXXPVTKALKAQRKVVKGEHGKRVRKIRNSVHF 738
           +KLKIA                PV KALK Q+KVVKGEHGKRVRKIR SVHF
Sbjct: 129 AKLKIAPKPKKTGIKGQKKVVKPVVKALKIQKKVVKGEHGKRVRKIRTSVHF 180


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 49.6 bits (113), Expect = 8e-05
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +1

Query: 649 PVTKALKAQRKVVKGEHGKRVRKIRNSVHF 738
           PV KALKAQ+K++KG  G RVRKIR SVHF
Sbjct: 108 PVQKALKAQKKILKGVQGSRVRKIRTSVHF 137


>UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus
           cervinus|Rep: Ribosomal protein L23Ae - Dascillus
           cervinus
          Length = 212

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 649 PVTKALKAQRKVVKGEHGKRVRKIRNSVHF 738
           PV KAL  Q+KV+KG  G R RKIRNSVHF
Sbjct: 141 PVQKALNVQKKVIKGPFGTRARKIRNSVHF 170


>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 38.3 bits (85), Expect = 0.20
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           +C  ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404



 Score = 38.3 bits (85), Expect = 0.20
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           +C  ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860



 Score = 34.3 bits (75), Expect = 3.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 TCVSQN-TGTCPESSCACPETSCACPET 230
           TC  Q  T +C +  C C E SCACP T
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNT 398



 Score = 34.3 bits (75), Expect = 3.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 TCVSQN-TGTCPESSCACPETSCACPET 230
           TC  Q  T +C +  C C E SCACP T
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNT 854


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 159 SQNTGTCPESSCACPETSC 215
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           TC +      PE +C  PE SCA PE
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPE 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,631,356
Number of Sequences: 1657284
Number of extensions: 3845998
Number of successful extensions: 8862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8842
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)