Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o20
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   5.1  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    28   9.0  

>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 156 VSQNTGTCPESSCACPETSC 215
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 738 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 565
           E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F   + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237

Query: 564 GS 559
           GS
Sbjct: 238 GS 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,708
Number of Sequences: 37544
Number of extensions: 108143
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)