Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o20
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    34   0.12 
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 658 KALKAQRKVVKGEHGKRVRKIRNSVHF 738
           KAL A++KVVKG+     R++R SVHF
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHF 37


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 652 VTKALKAQRKVVKGEHGKRVRKIRNSVHF 738
           V KA++A++ VVKG      + +R SVHF
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHF 36


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 711  YSLPMFTFYNLPLSLKCFSNRFHYFF 634
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 156 VSQNTGTCPESSCACPETSCAC 221
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,550,591
Number of Sequences: 27780
Number of extensions: 100659
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)