Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19o17
(346 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 28 1.8
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 27 3.1
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 27 3.1
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017) 27 4.1
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9) 27 5.4
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 26 7.1
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4) 26 7.1
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 9.4
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 26 9.4
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2) 26 9.4
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 26 9.4
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 26 9.4
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 2 EVYQNGQTYQKGWNYWQIWHTLRCL 76
+ YQ + GW WQIW LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668
>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 27 TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 131
T+ GIT T Y +S +K+V + T+ A TC
Sbjct: 19 TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 69 GASLRKMVKKMEVTQHAKYTCSFCGK 146
G +K ++ E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234
>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/76 (18%), Positives = 31/76 (40%)
Frame = -1
Query: 301 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 122
+ + + F N A + + V + +L+ +++ AS + E +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181
Query: 121 FACWVTSIFLTILRRE 74
+ CWV S F+T + +
Sbjct: 182 YECWVASFFITTAKTQ 197
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 148 SLPQNEQVYFACWVTSIFLTIL 83
S P + V FA W SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 131 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 271
++L GCY L C H+V M C + +L C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 126 TCSFCGKDAMKRS 164
TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255
>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
Length = 893
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -1
Query: 256 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 89
D H V EN + T RL D + + + + + VYF FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725
>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
Length = 292
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 265 LTADLHDEAAVVENTQAP 212
+TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 265 LTADLHDEAAVVENTQAP 212
+TADLHD A VV N + P
Sbjct: 972 ITADLHDTARVVVNLRTP 989
>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
Length = 815
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 2 EVYQNGQTYQKGWNYWQIWHTLRCL 76
+VY+N + G WQIW LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667
>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
Length = 438
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 219 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 106
+++ LQS YK C KNV HP Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 81 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 164
R+ VK + + + KY C C KD + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 256 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQ 164
++H+ + + +PPA+V+ H+L++ TQ
Sbjct: 1386 EIHEVMSQCFDENSPPASVIRHKLEELYSTQ 1416
>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
Length = 889
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 253 LHDEAAVV--ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 122
LHD AA V + + P T+ LH +PT R + P+ Y
Sbjct: 409 LHDAAASVYTASNEPPEFTIELHHELGYLPTYPRKVTIRPRKVPTY 454
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 132 SFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRL 272
S C KDA ++ VG ++C RCK G + S+CR +RL
Sbjct: 911 SACHKDAACQNTVGSYAC-RCKEGYEGDGY-------SNCRVEKKRL 949
>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 289 NYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPT 167
N FTSR +LTA+ A N P L+ MPT
Sbjct: 88 NDFTSRKMLTAEEMINAVFESNLNNRPENQRLYFRSSSMPT 128
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +3
Query: 135 FCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 251
+C C+ W+ KRC + G + F+ T +C
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCAC 632
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,182
Number of Sequences: 59808
Number of extensions: 206955
Number of successful extensions: 571
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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