Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o16
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    43   4e-05
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   2.3  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    27   3.1  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    26   4.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   5.4  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +2

Query: 155 VSFPFKKTNKAIFKKPASVLTHDIIYWKKLGLPVLVKEFGAIDYLDFSPVEPYYFAATCS 334
           +S P  +     F    + +T +  +W+   +PV+ KE+ AI  + FS   PY FA T  
Sbjct: 1   MSAPAGRLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVTSG 60

Query: 335 VRVQGHSDLLDHVDVCLSMFKN 400
            RVQ +      V   ++ FK+
Sbjct: 61  ARVQIYGASSRSVKKTIARFKD 82



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 535 LKVYDPVTKVVAKNISKFVEAAYGGCFRADGRLLVAG 645
           +++Y   ++ V K I++F + AY G  R DG+LL+AG
Sbjct: 63  VQIYGASSRSVKKTIARFKDTAYSGNIRKDGKLLLAG 99


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 230 YWKKLGLPVL--VKEFGAIDYLDFSPVEPYY 316
           YW  L  PV   +K+     +  FSP+ PYY
Sbjct: 259 YWPALAAPVYPSMKDVPNNPFTPFSPINPYY 289


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 24  CRMA-LFNVGFVFTYFANVFMED 89
           C++  +F +GFVFTY A   ++D
Sbjct: 95  CKLCVIFGLGFVFTYLAEQIVQD 117


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 67  KYVNTNPTLNSAMRHSDH 14
           KY++ NP +N A  H+ H
Sbjct: 211 KYISNNPIINGAAHHNGH 228


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 73  LAKYVNTNPTLNSAMRH 23
           LA ++N NP + S MRH
Sbjct: 513 LAPFINDNPLIQSGMRH 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,866
Number of Sequences: 5004
Number of extensions: 52485
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)