Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o16
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477...    28   7.4  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    27   9.7  

>03_06_0174 -
           32141956-32141985,32143658-32144452,32147645-32147759,
           32148134-32148399,32150193-32150213
          Length = 408

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
 Frame = +2

Query: 302 VEPYYFAATCSVRVQG-HSDLL-------DHVDVCLSM 391
           + P+YF ATCS R  G H D +       D V  CL M
Sbjct: 347 LSPWYFGATCSARELGLHEDCVYAFVPGDDEVPTCLKM 384


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 287 LDFSPVEPYYFAATCS--VRVQGHSDLLDH 370
           +D    EP+Y  A+CS   R+  H+ LL H
Sbjct: 18  IDCDSTEPFYSVASCSRTTRIACHASLLPH 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,524
Number of Sequences: 37544
Number of extensions: 286574
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)