Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o16
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         29   3.3  
SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)                 29   4.3  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/77 (35%), Positives = 39/77 (50%)
 Frame = +2

Query: 167 FKKTNKAIFKKPASVLTHDIIYWKKLGLPVLVKEFGAIDYLDFSPVEPYYFAATCSVRVQ 346
           F K     + K       D  YWKK   P+  +E+GA+ ++DF   +P+ FA T S RVQ
Sbjct: 5   FHKIQVKRYPKVERKQNSDSKYWKKFSSPIFAREYGAVTHVDFCNSKPHDFAVTGSTRVQ 64

Query: 347 GHSDLLDHVDVCLSMFK 397
            +S     V+  +S FK
Sbjct: 65  IYSSTTHQVNKTISRFK 81



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = +1

Query: 535 LKVYDPVTKVVAKNISKFVEAAYGGCFRADGRLLVAG 645
           +++Y   T  V K IS+F E AY G FR+DG+L++AG
Sbjct: 63  VQIYSSTTHQVNKTISRFKEVAYCGTFRSDGQLMIAG 99


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 305 EPYYFAATCSVRVQGHSDLLDHVDVCLSMFKNNLTL 412
           +P + AATC  R  GH  L  +VD+ +S+  +N+ +
Sbjct: 848 QPCFGAATCVNRYCGHDGLPSNVDMMVSLVISNVDM 883


>SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)
          Length = 343

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 427 SYLYYK*IQNLQICCSIVLFWL*GLFNSVT 516
           ++ YY+ ++  ++CC ++L WL G+  S+T
Sbjct: 124 AHKYYEMVRKGRVCCVLLLVWLMGIGVSLT 153


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 314  YFAATCSVRVQGHSDLLDHVDVCLS 388
            YF + CS R QG+ D+  HV  C++
Sbjct: 976  YFPSLCSSRNQGNLDIQPHVITCMT 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,973,574
Number of Sequences: 59808
Number of extensions: 365850
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)