Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o16
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-2|AAF60457.2|  561|Caenorhabditis elegans Hypothetical ...    42   5e-04
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    29   2.8  
Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U15304-1|AAA50369.1|  407|Caenorhabditis elegans PES-10 protein.       28   6.6  
AL110485-21|CAB60370.1|  407|Caenorhabditis elegans Hypothetical...    28   6.6  

>AC024753-2|AAF60457.2|  561|Caenorhabditis elegans Hypothetical
           protein Y23H5B.5 protein.
          Length = 561

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 164 PFKKTNKAIFKKPASVLT-HDIIYWKKLGLPVLVKEFGAIDYLDFSPVEPYYFAATCSVR 340
           P+    K + +K  ++L   D+IYWK++    + +E   +  +  SP +PY+ A T SVR
Sbjct: 4   PYLPAEKFLSRKQETILLDEDVIYWKRMQQLTVFQEPAVVSSVRISPKKPYHVATTSSVR 63

Query: 341 V 343
           +
Sbjct: 64  L 64


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 QWHKSRSPLKKQTKLYLKNLHQFLLTISFTGKNLV 248
           +W+ S     K+ + Y  N+  F  +  F+GKNLV
Sbjct: 332 KWNDSEQGNVKEKRKYFDNIDLFKFSCGFSGKNLV 366


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 150 HKSRSPLKKQT-KLYLKNLHQFLLTISFTGKNLVYL 254
           HK    LKKQ  KL L +  Q+L       KNLVY+
Sbjct: 77  HKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYV 112


>Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical
           protein C06B8.9 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
 Frame = +2

Query: 47  WICVYIFC*CFYGGYVISR*LHLFNFVLIYIITMAQVSFPFKKTNKAIFKKPASVLTHDI 226
           W+ V I        Y I+R   ++  +++ +I    V FP     + +    A+V++  I
Sbjct: 97  WVLVDILGQVMASSYSITRKYSVWLSIIMAMIRTLSVMFPMSNAIQKLTTTKATVISVLI 156

Query: 227 IYW-------KKLGLPVLVKEF-GAIDYLDFSPVEPYYFAATCSV---RVQGHSDL 361
           I+W        +L +   +K F   +D     P   +Y  A C +    + G++D+
Sbjct: 157 IFWVVVFLDFSRLAVYYRIKWFPDILDCTSMKPSNKHYTLAICILCDKTIYGYTDV 212


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +2

Query: 194 KKPASVLTHDIIYWKKLGLPVLVKEFGAIDYLDFS------PVEPYYFAATCSVRVQG 349
           K P  V       WK + +   ++EFGAI YLD S       V   Y   TC  +V G
Sbjct: 177 KYPGYVRNLKSYRWKPIVIAETLREFGAIWYLDSSVVFEKKNVSHIYDLVTCHGKVNG 234


>U15304-1|AAA50369.1|  407|Caenorhabditis elegans PES-10 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 158 SFPFKKTNKAIFKKPASVLTHDIIYWKKLGL----PVLVKEFGAIDYLDFSPVEPYYFAA 325
           +FP      A F K A  L+H ++ WK   L      ++KEF  I      P E +    
Sbjct: 44  NFPALVAEYAPFNKAAQSLSHSVLVWKNDELAQEKSYMLKEFVRICKDQHQP-EEFLLRL 102

Query: 326 TCSV 337
           TCS+
Sbjct: 103 TCSL 106


>AL110485-21|CAB60370.1|  407|Caenorhabditis elegans Hypothetical
           protein Y46G5A.27 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 158 SFPFKKTNKAIFKKPASVLTHDIIYWKKLGL----PVLVKEFGAIDYLDFSPVEPYYFAA 325
           +FP      A F K A  L+H ++ WK   L      ++KEF  I      P E +    
Sbjct: 44  NFPALVAEYAPFNKAAQSLSHSVLVWKNDELAQEKSYMLKEFVRICKDQHQP-EEFLLRL 102

Query: 326 TCSV 337
           TCS+
Sbjct: 103 TCSL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,500
Number of Sequences: 27780
Number of extensions: 291748
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)