Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o14
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0977 - 12842948-12843572,12844326-12844741                       30   1.5  
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247...    29   3.6  
03_05_1008 - 29644352-29645297,29645381-29645769                       29   3.6  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    29   4.7  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    29   4.7  
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   4.7  

>03_02_0977 - 12842948-12843572,12844326-12844741
          Length = 346

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 159 GGVTKTILAGQLACSAGNHAVVSTLLIRHAR 251
           G  TK ++AG LA  +G  AVV  LL  H R
Sbjct: 209 GYATKRLVAGLLAVESGQDAVVRGLLFEHRR 239


>05_04_0312 -
           20123892-20124085,20124183-20124508,20124728-20124732,
           20125063-20125670,20125744-20125884,20126067-20126194,
           20126288-20126329,20126613-20126755
          Length = 528

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 32  SLCTCSRMLETRQNLRLRRKCEASPVRD 115
           SLC C+     R   R+RR+CE    RD
Sbjct: 18  SLCVCACSCFLRDGGRMRRRCEGGSARD 45


>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 167 YKNHPGRSTRLQRWKSRSCLYTADPS-RTVTGSMNNL 274
           Y+N PG  TR+  + S S L   DP+ + +TG MN L
Sbjct: 103 YRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVL 139


>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
            23300052-23300415,23300493-23300574,23300793-23300873,
            23300974-23302106,23302202-23302350,23302426-23302516,
            23303628-23305940
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
 Frame = +2

Query: 20   YRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL------SSPEPVRLAKRWWRYKNHP 181
            Y P  L    +    RQ L   + CE + +RD+ +      + PE    AK+W   K   
Sbjct: 1060 YVPKPLSKELQQQNLRQILPSEKSCEENKIRDKEIVERSTGAKPETAPEAKKWEGKKTSK 1119

Query: 182  GRSTRLQRWKSRS 220
            G       W+ R+
Sbjct: 1120 GHGKSHPSWRRRN 1132


>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
            27130165-27130255,27130515-27130595,27130764-27131830,
            27132060-27132071,27132465-27133209,27133210-27135244,
            27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 128  SPEPVRLAKRWWRYKNHPGRSTRLQ 202
            SPEP +  KR + +K H G  +RL+
Sbjct: 1013 SPEPDKQVKRQFEFKTHDGSDSRLE 1037


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 548 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 664
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,941,871
Number of Sequences: 37544
Number of extensions: 414727
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)