Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o12
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   214   1e-56
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   212   4e-56
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    29   0.59 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.77 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.2  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.2  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   9.5  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  214 bits (522), Expect = 1e-56
 Identities = 100/188 (53%), Positives = 136/188 (72%)
 Frame = +3

Query: 90  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 269
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 270 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 449
           E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137

Query: 450 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSXAKDI 629
           F IGFT++     +KT YAQ +Q+RAI +KM ++I        ++E+V KLIP+   + I
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAI 197

Query: 630 EKACHGIY 653
           EKA + IY
Sbjct: 198 EKATNNIY 205


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  212 bits (517), Expect = 4e-56
 Identities = 98/188 (52%), Positives = 139/188 (73%)
 Frame = +3

Query: 90  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 269
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 270 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 449
           E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RV
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137

Query: 450 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSXAKDI 629
           F IGFT + +   +KT YAQ +Q+RAIR+KM ++I    ++  +RE+V KLIP+   ++I
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREI 197

Query: 630 EKACHGIY 653
           E+A   I+
Sbjct: 198 ERATGSIF 205


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +3

Query: 168 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 344
           T VN+    TK+A    KG   +V++  L+   DAE + + F  I EY++  N       
Sbjct: 82  TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137

Query: 345 MDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 494
            D T  K    + +W ++ E    +    D  +    C+   ++  L+  K
Sbjct: 138 KDKTQGK---FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 225 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 398
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 399 IEANIDVKTT 428
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 392 LPFFNHPPELIGCEVHAVEVAEHITS 315
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 452  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 544
            LHW+    L+  +Q +  P H+GQ  S  + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 369 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 506
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 459 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 587
           G T +DS+ ++    A H + R +++K  E ++ D +N  +++
Sbjct: 7   GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 348 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 446
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 371 PELIGCEVHAVEVAEHITSL 312
           PELI C  H  EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,642
Number of Sequences: 5004
Number of extensions: 55894
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)