Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o06
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    29   0.39 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   4.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   6.4  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.4  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   6.4  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 18  MDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSVDV 188
           MD ++  + +D       +D+L +I     K  PF L+    ++ L+ G IDK + +
Sbjct: 249 MDQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +3

Query: 132 NYTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNIFEYEFVVLEHNLSTVHVI 311
           NYT+ K+   GF+ +  +  S     K N   ++L   +S    +   +L+  L     +
Sbjct: 81  NYTLKKKNEEGFLSQQENKSSNQNPSKANNLFDKLG--VSKPITFIACILQ--LGGTSFM 136

Query: 312 NAETKTKLGHINVS 353
            +E +TKL  IN S
Sbjct: 137 ESELQTKLSTINSS 150


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 126 LQNYTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNI 257
           L N T L    N F+   + +  +S+L+  NF  N L+   S I
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKI 567


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 LHRFEAVEQRVYRQVC 181
           LH FE    RVY Q+C
Sbjct: 180 LHDFETTSNRVYSQIC 195


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 241 LVSRFILKLNFCNSLIEPTSTDLSINPLLNRFKTV*FCSLKGAHLE*LKEIFF 83
           LV +++L   FC S+++    ++++NP ++ +     C L       LK++ F
Sbjct: 268 LVYKWVLNF-FCKSVVKQAEAEVAVNP-ISAYPLAKVCLLLQTQNADLKDLLF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,048
Number of Sequences: 5004
Number of extensions: 42908
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)