Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o06
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575...    31   0.70 
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298...    30   1.2  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   3.8  

>06_01_0770 -
           5756200-5756741,5756790-5757286,5757356-5757782,
           5757854-5757911
          Length = 507

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 418 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 510
           D  P  F+NT D+F   I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348


>06_02_0325 +
           14428065-14428799,14428916-14428993,14429607-14429844,
           14431199-14431296,14431770-14432063,14432418-14432702
          Length = 575

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = +3

Query: 18  MDGSVVSMCVDNAFAY-TTDDLLKNISFSHSKCAPFKLQ-NYTV--LKRLSNGFIDKSVD 185
           MD   +   ++    Y  ++D+ K++ F    C  +  + +Y +  +KR+  GF+   + 
Sbjct: 281 MDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGDYIIELMKRVKKGFMKNWLA 340

Query: 186 VGSISELQKFNFKINRLTSYISNIFEYEFVVLEHNLSTVHVINAETK-TKLGHINVSLNQ 362
            G  S++Q+   +  +    I  + E +   +  N+S   ++  ++     G  + + +Q
Sbjct: 341 AGLYSDVQENVTRRKKEKDEILAVIENDTAAVNSNISDQQIMEVDSGINNAGSHDTTSSQ 400

Query: 363 NDP 371
             P
Sbjct: 401 EQP 403


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 277  TTNSYSKMFDM*LVSRFILKLNFCNSLIEPTSTDLSIN 164
            T  SY K+ +  + S F+L  +    L++P  T+LSIN
Sbjct: 1092 TLQSYCKLLEYCVNSSFLLSPSHNQLLVQPMVTELSIN 1129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,519
Number of Sequences: 37544
Number of extensions: 229564
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)