Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o06
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29780.1 68417.m04241 expressed protein                             29   1.8  
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    29   3.1  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    28   4.1  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    28   4.1  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At1g04050.1 68414.m00392 SET domain-containing protein / suppres...    27   7.2  

>At4g29780.1 68417.m04241 expressed protein
          Length = 540

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   IINMDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCA 116
           ++N DG    +C+ N  + T D +L+  S S  + A
Sbjct: 365 VVNADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAA 400


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 226 ILKLNFCNSLIEPTSTDLSINPLLN 152
           IL L FC SL+E  S+  ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 183 DVGSISELQKFNFKINRLTSYISNIFE-YEFVVLEHNLSTVHVINAETKTKLGHINVSLN 359
           +VGS+ +LQK N   N+L S+ S + +     VL+   +++     ET  KL  + + LN
Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRL-LN 483

Query: 360 QNDPNVL 380
             + N++
Sbjct: 484 LENNNLV 490


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 226 ILKLNFCNSLIEPTSTDLSINPLL 155
           ILKL FC SL+E  S+  ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30   VVSMCVDNAFA-YTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFI 170
            V S+  +N FA    D LLK +S +  K  P+K Q   V ++ S+G I
Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691


>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
           of variegation related 1 (SUVR1) identical to suppressor
           of variegation related 1 [Arabidopsis thaliana]
           GI:15004614; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA trithorax 3
           (ATX3) partial cds GI:15217142
          Length = 630

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 45  VDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLK 149
           VDN FAYT D LLK   F  ++ +  + Q   VL+
Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,030
Number of Sequences: 28952
Number of extensions: 203797
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)