Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19o04
         (528 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023115-1|AAY55531.1|  406|Drosophila melanogaster IP10861p pro...    33   0.32 
BT023063-1|AAY55479.1|  407|Drosophila melanogaster IP10961p pro...    33   0.32 
AE013599-627|AAF59107.2|  399|Drosophila melanogaster CG30371-PA...    33   0.32 
U81788-1|AAB50404.1| 1921|Drosophila melanogaster kinesin-73 pro...    28   6.8  
BT011189-1|AAR88550.1| 1108|Drosophila melanogaster LP11192p pro...    28   6.8  
AE013599-2071|AAF58129.1| 1921|Drosophila melanogaster CG8183-PB...    28   6.8  
AE013599-2070|AAM70975.1| 1921|Drosophila melanogaster CG8183-PA...    28   6.8  
X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.       28   9.0  
X07278-1|CAA30259.1|  622|Drosophila melanogaster protein ( Dros...    28   9.0  
BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p pro...    28   9.0  
AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA ...    28   9.0  

>BT023115-1|AAY55531.1|  406|Drosophila melanogaster IP10861p
           protein.
          Length = 406

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 345 PSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEG 479
           PS++ Y + +N+  M+  EQ +     NN+ AV +   N++++ G
Sbjct: 223 PSSSRYYQQYNIQQMIPHEQYVSDPDVNNDIAVLITASNIQWSRG 267


>BT023063-1|AAY55479.1|  407|Drosophila melanogaster IP10961p
           protein.
          Length = 407

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 345 PSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEG 479
           PS++ Y + +N+  M+  EQ +     NN+ AV +   N++++ G
Sbjct: 224 PSSSRYYQQYNIQQMIPHEQYVSDPDVNNDIAVLITASNIQWSRG 268


>AE013599-627|AAF59107.2|  399|Drosophila melanogaster CG30371-PA
           protein.
          Length = 399

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 345 PSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEG 479
           PS++ Y + +N+  M+  EQ +     NN+ AV +   N++++ G
Sbjct: 216 PSSSRYYQQYNIQQMIPHEQYVSDPDVNNDIAVLITASNIQWSRG 260


>U81788-1|AAB50404.1| 1921|Drosophila melanogaster kinesin-73
           protein.
          Length = 1921

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 DNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAVN 446
           D+     +  +L GN    +   + PSA NY+E  + L    +A++++ H + N +    
Sbjct: 306 DSVLTWLLKDNLGGNSRTVMVATISPSADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 365

Query: 447 VI 452
           +I
Sbjct: 366 II 367


>BT011189-1|AAR88550.1| 1108|Drosophila melanogaster LP11192p
           protein.
          Length = 1108

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 DNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAVN 446
           D+     +  +L GN    +   + PSA NY+E  + L    +A++++ H + N +    
Sbjct: 306 DSVLTWLLKDNLGGNSRTVMVATISPSADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 365

Query: 447 VI 452
           +I
Sbjct: 366 II 367


>AE013599-2071|AAF58129.1| 1921|Drosophila melanogaster CG8183-PB,
           isoform B protein.
          Length = 1921

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 DNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAVN 446
           D+     +  +L GN    +   + PSA NY+E  + L    +A++++ H + N +    
Sbjct: 306 DSVLTWLLKDNLGGNSRTVMVATISPSADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 365

Query: 447 VI 452
           +I
Sbjct: 366 II 367


>AE013599-2070|AAM70975.1| 1921|Drosophila melanogaster CG8183-PA,
           isoform A protein.
          Length = 1921

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 DNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAVN 446
           D+     +  +L GN    +   + PSA NY+E  + L    +A++++ H + N +    
Sbjct: 306 DSVLTWLLKDNLGGNSRTVMVATISPSADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 365

Query: 447 VI 452
           +I
Sbjct: 366 II 367


>X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 517 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 576

Query: 316 KKEVS 330
           K+ VS
Sbjct: 577 KRIVS 581


>X07278-1|CAA30259.1|  622|Drosophila melanogaster protein (
           Drosophila mRNA fornuclear lamin Dm0. ).
          Length = 622

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVS 330
           K+ VS
Sbjct: 578 KRIVS 582


>BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p
           protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVS 330
           K+ VS
Sbjct: 578 KRIVS 582


>AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA
           protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVS 330
           K+ VS
Sbjct: 578 KRIVS 582


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,889,814
Number of Sequences: 53049
Number of extensions: 442036
Number of successful extensions: 843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)