Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19o02
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein. 34 0.37
U78313-1|AAB39748.1| 246|Homo sapiens myogenic repressor I-mf p... 32 1.5
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 32 1.5
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 32 1.5
BC007836-1|AAH07836.1| 246|Homo sapiens MyoD family inhibitor p... 32 1.5
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 32 1.5
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 32 1.5
AL035588-17|CAI22456.1| 231|Homo sapiens MyoD family inhibitor ... 32 1.5
AL035588-16|CAD92607.1| 185|Homo sapiens MyoD family inhibitor ... 32 1.5
AL035588-15|CAB54148.1| 246|Homo sapiens MyoD family inhibitor ... 32 1.5
AL035588-14|CAO72132.1| 213|Homo sapiens MyoD family inhibitor ... 32 1.5
AL035588-13|CAO72133.1| 142|Homo sapiens MyoD family inhibitor ... 32 1.5
U80759-1|AAB91450.1| 182|Homo sapiens CAGH4 alternate open read... 31 2.6
>U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein.
Length = 1017
Score = 34.3 bits (75), Expect = 0.37
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 603
++G+ K+ +R+ D K LH+ + +GE D L+DK+E++ + ++ N E ++
Sbjct: 21 RRGIEKLRVRIEADEKKQ--LHIAEKLKERDGENDSLKDKVENLERELQMSEENQELVIL 78
Query: 604 THETFKNDV 630
E K +V
Sbjct: 79 DAENSKAEV 87
>U78313-1|AAB39748.1| 246|Homo sapiens myogenic repressor I-mf
protein.
Length = 246
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 203
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 603
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2117 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2174
Query: 604 THETFKNDV 630
E K +V
Sbjct: 2175 DAENSKAEV 2183
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 603
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2214 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2271
Query: 604 THETFKNDV 630
E K +V
Sbjct: 2272 DAENSKAEV 2280
>BC007836-1|AAH07836.1| 246|Homo sapiens MyoD family inhibitor
protein.
Length = 246
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 203
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 603
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2118 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2175
Query: 604 THETFKNDV 630
E K +V
Sbjct: 2176 DAENSKAEV 2184
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 603
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2118 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2175
Query: 604 THETFKNDV 630
E K +V
Sbjct: 2176 DAENSKAEV 2184
>AL035588-17|CAI22456.1| 231|Homo sapiens MyoD family inhibitor
protein.
Length = 231
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 203
>AL035588-16|CAD92607.1| 185|Homo sapiens MyoD family inhibitor
protein.
Length = 185
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 96 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 142
>AL035588-15|CAB54148.1| 246|Homo sapiens MyoD family inhibitor
protein.
Length = 246
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 203
>AL035588-14|CAO72132.1| 213|Homo sapiens MyoD family inhibitor
protein.
Length = 213
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 203
>AL035588-13|CAO72133.1| 142|Homo sapiens MyoD family inhibitor
protein.
Length = 142
Score = 32.3 bits (70), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 370 LNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
L + D C +C C +F LC +L C SC C C CC
Sbjct: 96 LQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCL--CCCC 142
>U80759-1|AAB91450.1| 182|Homo sapiens CAGH4 alternate open reading
frame protein.
Length = 182
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 383 FTSRNPNAISTRWAHCSRPSRGC 451
FT P A W CSRP+RGC
Sbjct: 60 FTPTQPRAPRPPWTPCSRPTRGC 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,212,722
Number of Sequences: 237096
Number of extensions: 1356110
Number of successful extensions: 3463
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -