Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n24
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   3.7  
SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)              29   4.9  

>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 596
           K  + KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 68  KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 402  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 581
            +A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++ 
Sbjct: 979  QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 1035

Query: 582  LSKYMAMLSTLEMTQPLLEIFRN 650
             S+  +M   L   Q   E  RN
Sbjct: 1036 RSEQESMHQVLTERQQECETLRN 1058


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 402  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 581
            +A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++ 
Sbjct: 927  QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 983

Query: 582  LSKYMAMLSTLEMTQPLLEIFRN 650
             S+  +M   L   Q   E  RN
Sbjct: 984  RSEQESMHQVLTERQQECETLRN 1006


>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
          Length = 227

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
 Frame = +3

Query: 324 YTSKRDRFYESFKRYHAS*SLYEHASKANVVD-------KCIKMKRVKCNKVRTVTEIVN 482
           YT +R+  + + +RY  +  L E   K N +D          K+   K N V+ + E+  
Sbjct: 59  YTKERE--FVATRRYEENMKLCETLKK-NKIDVPGYEEKTADKLSEAK-NIVKDIAEVNK 114

Query: 483 S-DEKIQKTYELAEFDLKNLSSLESY-ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKA 656
             +EK  K Y+L    L+ L+ ++ Y ETL+    + K +    T +  Q   EI  +  
Sbjct: 115 KIEEKKAKLYDLERRHLRALNKIDHYEETLRASEQIGKRVVTNYTPKSDQEYQEIISDLR 174

Query: 657 DTRQIAA 677
           D  + AA
Sbjct: 175 DGIKHAA 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,381
Number of Sequences: 59808
Number of extensions: 323181
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)