Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n23
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.1  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    27   1.5  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   2.6  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   3.5  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.6  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   8.1  

>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 373 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 492
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 367 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLR 537
           LN ++      +R +N++     T QG +  +    +NF NK N L       E  DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR 172


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 322 RAQFQDLCKNLLHCRIL 272
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 HINVQQWSHIVKWDSFKCNTHSF 240
           H++V  WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 433 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 290
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +1

Query: 241 KYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSL 420
           K   +  +T     + +D  KGL+  +D       +    YH+N  +F+ +      +++
Sbjct: 423 KVNALPEETTLAVNHRVDASKGLKQVYDRYGGLLEEFGHEYHVNVTLFNGETVVEYEDAI 482

Query: 421 GALFATKQGLLKILMRLNFDNKSNA 495
           G +FA+    L+      +D  S+A
Sbjct: 483 GHIFASTAKTLEPSPVSPYDESSDA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,603
Number of Sequences: 5004
Number of extensions: 34872
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)