Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n23
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.13 
01_06_1034 + 33962813-33963802                                         29   2.7  
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     29   3.6  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    27   8.2  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    27   8.2  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWD 348
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 400 WISACEK*FRLNGKLDRCPNCN 335
           W  AC +  R++G+   CPNCN
Sbjct: 8   WCYACRRPIRVSGQDITCPNCN 29


>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 468
           +D D +  LNE++  ++K K+DL     L+  K  L ++  R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 502 AATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 383
           AA RCF  Q  T+S   ++P WS   RP   + + +  C+
Sbjct: 49  AAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 199  IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQV 360
            ++ W +F+  +   K R  + D + K + +I+    +   HDDI+ C + S ++
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTEL 2886


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,674,210
Number of Sequences: 37544
Number of extensions: 209391
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)