Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n21
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    31   0.19 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   7.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   9.7  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +3

Query: 444 NEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENL 590
           N  I T +V  A    APDI  L      L S  N    FTT+T+ E L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEEL 583


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +3

Query: 30  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGST 209
           N    T A +T+  +N   + + N      TN+           A A   + +  N  +T
Sbjct: 63  NNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNAAAT 122

Query: 210 VWTNAAPSHK 239
             TNA  S K
Sbjct: 123 TTTNADGSDK 132


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 NKLQDMIQDLQSEYNKKITFTTDTILENLKNIK 602
           NK Q+MIQD+ +   ++I   T T +E  +N +
Sbjct: 37  NKSQEMIQDIPARDREEIENITRTFVELQENYR 69


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 126 SDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAP-SHKLIKNNKNYIHVF 275
           SDG       LTA++   SP +S   ++   N  P S K + +N + +  F
Sbjct: 170 SDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLASNTSLVQSF 220


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 369 MGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYN 548
           M  + K+++ +   +T L     +LNEA  ++        P P  N +QD+ + +Q    
Sbjct: 309 MENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNA 368

Query: 549 KKI 557
           +K+
Sbjct: 369 EKL 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,966
Number of Sequences: 5004
Number of extensions: 56602
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)