Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n21
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759...    29   3.3  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    28   7.6  

>01_01_0965 -
           7589659-7589785,7590188-7590317,7590339-7590438,
           7590524-7590643,7590910-7591145,7591585-7591714
          Length = 280

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 572 ISGKSNFFIVFRLQILYHILQLVNVWRGRVGGRMNVQS 459
           + G +N F +F L +    + LVN WR R+  R N+QS
Sbjct: 190 LEGMTNAFNLFTLTVHLRKMTLVNTWRQRM-LRRNIQS 226


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 483 NSPAPDINKLQDMIQD--LQSEYNKKITFTTD--TILENLKNIKDL 608
           + P+PDI+ L+DM  D  L ++      F T    IL+N  NIK+L
Sbjct: 568 DDPSPDIHGLKDMPVDIGLLTDLQTLSRFVTSKRNILDNHSNIKEL 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,889
Number of Sequences: 37544
Number of extensions: 387448
Number of successful extensions: 947
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)