Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n21
         (659 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126466-1|AAI26467.1| 1770|Homo sapiens Nedd4 binding protein 2...    30   8.4  
AY267013-1|AAP22172.1| 1770|Homo sapiens BCL-3 binding protein p...    30   8.4  
AK001542-1|BAA91748.1|  659|Homo sapiens protein ( Homo sapiens ...    30   8.4  

>BC126466-1|AAI26467.1| 1770|Homo sapiens Nedd4 binding protein 2
           protein.
          Length = 1770

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYI 266
            + N GST+  N  PSH ++  +K +I
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFI 228


>AY267013-1|AAP22172.1| 1770|Homo sapiens BCL-3 binding protein
           protein.
          Length = 1770

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYI 266
            + N GST+  N  PSH ++  +K +I
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFI 228


>AK001542-1|BAA91748.1|  659|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10680 fis, clone NT2RP2006573, weakly similar to
           2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (EC
           3.1.4.37). ).
          Length = 659

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYI 266
            + N GST+  N  PSH ++  +K +I
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFI 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,546,639
Number of Sequences: 237096
Number of extensions: 1911665
Number of successful extensions: 7276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7272
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)