Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n21
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical ... 36 0.034
AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical ... 31 0.55
AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical ... 31 0.55
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 31 0.72
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 30 1.7
Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical pr... 29 2.2
U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical p... 29 2.2
U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 29 2.2
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 29 2.2
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 29 2.2
Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical pr... 29 2.9
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 29 2.9
U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical p... 29 3.9
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un... 28 5.1
>AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical
protein K09C6.9 protein.
Length = 195
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +3
Query: 393 DPLCEVKTQLCAIQESLNEAISTLNVHAAAN---SPAPDINKLQDMIQDLQSEYNKKITF 563
DP K + C I S+N+AI+ +N+++ N + + ++KL +L K
Sbjct: 60 DPELVSKAKTCVINNSMNKAIAAMNLYSGFNGCTNLSDLVSKLATPFINLCKPVINKALS 119
Query: 564 TTDTILENLK---NIKDLMCLNK 623
T DT N K N K C+NK
Sbjct: 120 TLDTCKANNKQTGNAKQTACMNK 142
>AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical
protein B0273.3 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 50 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 223
R +D+ H VF+R+ GG + G ++ L +RRR R R+D +D R
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123
>AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical
protein Y48G1BM.1 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 50 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 223
R +D+ H VF+R+ GG + G ++ L +RRR R R+D +D R
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 372 GAQGKVFDPLCEVKTQLCAIQESLNEAISTL-NVHAAANSPAPDIN--KLQDMIQDLQSE 542
G QGK D + E+ ++ ++ +++A+ L + A D N K M+QD+Q
Sbjct: 455 GMQGKDRDSIIELVMEISGVKGIVHDAMKMLKSTEMPELDLAMDANAKKSLQMVQDIQKS 514
Query: 543 YNKK 554
YN+K
Sbjct: 515 YNRK 518
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 372 GAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSP 491
G Q +FDPL V +L + S+NE +++ A +N P
Sbjct: 538 GWQELIFDPLPVVYIRLVGTRNSINEVFHVVHLEAPSNVP 577
>Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical
protein T16H12.6 protein.
Length = 566
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 557 NFFIVFRLQILYHILQLVNVWRGRV 483
N +FRL +LYH V VWR V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRAMV 181
>U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical
protein F36D4.5b protein.
Length = 315
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 35 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 127
DY + V I H+ + VF + + GGH YQF
Sbjct: 25 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 55
>U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical
protein F36D4.5a protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 35 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 127
DY + V I H+ + VF + + GGH YQF
Sbjct: 44 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 74
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 557 NFFIVFRLQILYHILQLVNVWRGRV 483
N +FRL +LYH V VWR V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRSMV 181
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 405 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 554
+V QL +I ESL ++ + +++ ANS P+ + + DL + K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 483 NSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENLKNIKD 605
N D+++L + I+ ++S YNK + +++ +N+K + D
Sbjct: 99 NQLVKDVDELHEEIEKMESLYNKPADYASNSYTDNMKLMLD 139
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 405 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 554
+V QL +I ESL ++ + +++ ANS P+ + + DL + K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591
>Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical
protein C27H6.3 protein.
Length = 660
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +3
Query: 405 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILE 584
+++ Q+ ++ S+N+ +S S P KL D+ ++E+N F I E
Sbjct: 361 QLRNQVYRLESSINQIMSRKCTIRYGTSIMPSFAKLIDVAPPTEAEFNNPCLFPEKRIAE 420
Query: 585 N 587
N
Sbjct: 421 N 421
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 262 IFMCLVYLNICQITI*IIKNVLKNITFLNRLLATCLW 372
IF CLV L+ + + N+L ++ NRL ATC+W
Sbjct: 396 IFTCLVVLSYYGVFFNHLGNILLSV---NRLSATCVW 429
>U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical
protein C25H3.11 protein.
Length = 947
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 54 QSTSNTHNFMYSPDNNLEVVIITNSDG---DHDGYLELTAAAK 173
QST +T + +P N L VV +T S+G +H+ LE TA K
Sbjct: 382 QSTVSTDDSNTNPSNALAVVPVTTSNGASSNHNQSLESTAIMK 424
>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 6 protein.
Length = 2098
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 115 MTTSRLLSGEYMKLCVFDVDWA-SVFIIPFL*QPDKNNL 2
+ T ++ GE + C+F + A +V+++P L +P KN L
Sbjct: 1518 LLTESVVKGENSRTCLFGLIRAENVYVLPTLVKPSKNTL 1556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,908
Number of Sequences: 27780
Number of extensions: 325634
Number of successful extensions: 795
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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